Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H03f
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    99   1e-21
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    28   2.6  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 46/88 (52%), Positives = 57/88 (64%)
 Frame = -3

Query: 362 EAAKALXKRQAVLCVLAENCDEAAYKKLVQALCNXHQIPLVKVXXXKKLGEWAGXXKIXK 183
           E  KAL KR+A  CVLAENCDE  Y KLV+ LC  HQIPL+KV   K +GE+ G  K  K
Sbjct: 45  ETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDK 104

Query: 182 DXKXRKIVGCSCVVIKDFGEETPALDVL 99
           + K RK+VGCS  V+ ++G E     +L
Sbjct: 105 EGKARKVVGCSSAVVTNWGNEEQGRAIL 132


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -3

Query: 362 EAAKALXKRQAVLCVLAENCDEAAYKKLVQALCNXHQIPLVKVXXXKKLG 213
           +  K L + +  +C+LA N         +  +C   +IP V +   ++LG
Sbjct: 75  DVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 285 LVCGFITVLSQNT*YCLPLXKSFSGFVK 368
           L+C  I ++ Q +  CLPL K F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 285 LVCGFITVLSQNT*YCLPLXKSFSGFVK 368
           L+C  I ++ Q +  CLPL K F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,225,054
Number of Sequences: 27780
Number of extensions: 109133
Number of successful extensions: 234
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)