Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   5.2  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    25   9.0  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 299 RNSSNKHLI*TA*RSMSLNPYDLNKL*FH*ARDRPKTYSDSCLFSDAF 442
           + S+NK ++ T  R  +L  Y    L  +   +  + YS+ C F+D F
Sbjct: 337 KGSTNKEILETILRKPNLQTYFFEFLKKNFCDENQRFYSEVCEFNDYF 384


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 132 HDSTI*KINTHFKNVTS-DFIFHNILD*IRSHRTNIFTTRLPRHVTFELSLNQVQVF 299
           H S++ +I TH K   S DF  HN +D        +  T       FE+ +NQ+Q+F
Sbjct: 384 HISSV-QILTHCKLPESQDFSMHNDVD-------ELLHTIPSNGAVFEMKINQIQIF 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,004
Number of Sequences: 5004
Number of extensions: 38448
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)