Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated...    28   4.7  
Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated
           ion channel protein 10 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 5   LIIIKKPTFINITFSLGLNVCLMQNQLIMKTIGFSHTQK 121
           L  ++ P  +N+T  LG+ + L +NQ +   +  SHTQ+
Sbjct: 86  LPFVQGPVLVNMTIVLGILIELKENQQLAAYV-ISHTQR 123


>Z92831-5|CAJ58498.1|  247|Caenorhabditis elegans Hypothetical
           protein F22G12.8 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 489 LATAARAT-NTKAINLIKASLNKQLSEYVLG 400
           LA AA A    + INLI+ S+NK+++E +LG
Sbjct: 114 LAEAAGAILKIRKINLIEDSINKKIAEDILG 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,745,012
Number of Sequences: 27780
Number of extensions: 209479
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)