Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   1.7  
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...    25   5.2  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    25   5.2  
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...    25   5.2  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   5.2  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   6.8  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   6.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   9.0  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 243 NSRPKLAKSVQPFSSFSETNEQQFIF 320
           N+ P+L +S++P+ S  + + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 224 KVRKYK-KARNYIKTNNFVFPLMYPLDVSFIY 132
           KV++Y+ K RN+  T NF F +   +D+   Y
Sbjct: 85  KVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = -1

Query: 419 KKSSTTYIFEFNKLN*SSIKNIELLVSTIISIYKNELLFVSLAKTRERLDRFG*FWS 249
           K   T Y+  F K N S  K  ELL    IS +  EL+      +R+ L R    W+
Sbjct: 80  KSERTQYLEYFRKKNPSFEKVSELLYFLNISTFPIELVISKYNPSRQFLLRVHIMWT 136


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 224 KVRKYK-KARNYIKTNNFVFPLMYPLDVSFIY 132
           KV++Y+ K RN+  T NF F +   +D+   Y
Sbjct: 85  KVKEYELKKRNFSATGNFGFGIQEHIDLGIKY 116


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 389 IQICR*LKIFFCYDFFLNKKLVMSLVQCCKNIAEXNG 499
           I + R  +IF C D+    +L+   V  C N+   NG
Sbjct: 513 IFLARNFRIFKCMDWAEKVRLLWEFVNTCINVLYKNG 549


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 200 RNYIKTNNFVFPLMYPLDVSFIYR-LRHYEVCRV 102
           +N  + NNF   L Y  DVS+ +R LR     RV
Sbjct: 45  QNEAQLNNFFDTLQYSKDVSYYFRYLRKLNCSRV 78


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
 Frame = -1

Query: 461 ETLQVFYLEKNHNKKKSSTTYIFEFN--KLN*SSIKN--IELLVSTIISIYKNELLFVSL 294
           E LQVF LEK + K +   T   EF+  KL     ++  + L    +I   ++E+   +L
Sbjct: 5   EALQVFLLEKLNEKNEIPNTSHLEFDGKKLGPQEAQSAILSLAAKNMIEFSRHEIEIYNL 64

Query: 293 AKTRERL 273
               E +
Sbjct: 65  TAEGENI 71


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 276  AGPIWLILVLNYSWKSREGEKI*KSSKLY 190
            +GPIW +   N  W+SRE        KL+
Sbjct: 917  SGPIWQLKKENNYWESRENSTWSSCPKLW 945


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,471
Number of Sequences: 5004
Number of extensions: 35229
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)