Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical p...    29   1.5  
Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical p...    27   6.2  
Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine n...    27   6.2  
AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho ...    27   6.2  
AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-...    27   6.2  

>U28944-17|ABB88239.1|  222|Caenorhabditis elegans Hypothetical
           protein C18A3.11 protein.
          Length = 222

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 376 IKVQLKTSNC*-YQL*SLYIKMNCCSLVSLKLENGWT 269
           IK  L T NC  Y    L++  N  S+   K ENGWT
Sbjct: 110 IKTTLPTDNCPSYDNLDLFVTFNGTSISWKKTENGWT 146


>Z68159-10|CAD30432.1|  826|Caenorhabditis elegans Hypothetical
           protein C33D9.1b protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 SVQPFSSFSETNEQQFIFIYRD 332
           SVQ  SS +E  E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536


>Z68159-9|CAA92282.2|  844|Caenorhabditis elegans Hypothetical
           protein C33D9.1a protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 SVQPFSSFSETNEQQFIFIYRD 332
           SVQ  SS +E  E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536


>AF339059-1|AAL50361.1|  826|Caenorhabditis elegans Rho guanine
           nucleotide exchangefactor FGD-1 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 SVQPFSSFSETNEQQFIFIYRD 332
           SVQ  SS +E  E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536


>AF326352-1|AAL50355.1|  844|Caenorhabditis elegans putative Rho
           guanine nucleotideexchange factor FGD-1 protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 SVQPFSSFSETNEQQFIFIYRD 332
           SVQ  SS +E  E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536


>AB060647-1|BAB43906.1|  826|Caenorhabditis elegans putative GDP-GTP
           exchange factor protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 267 SVQPFSSFSETNEQQFIFIYRD 332
           SVQ  SS +E  E++FIF++ D
Sbjct: 515 SVQKISSTTEKTEERFIFLFND 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,816
Number of Sequences: 27780
Number of extensions: 183065
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)