Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333G12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 140 9e-35
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 57 1e-09
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 41 1e-04
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 38 0.001
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 35 0.008
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.011
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 33 0.026
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 33 0.034
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 33 0.034
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 33 0.034
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 32 0.045
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 31 0.10
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.10
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 31 0.10
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.14
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 31 0.14
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 30 0.18
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 30 0.24
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 29 0.32
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.32
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.32
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 29 0.42
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 29 0.56
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 28 0.73
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 28 0.97
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 0.97
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 1.3
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 1.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 1.7
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 26 3.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 3.9
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.9
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 26 3.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 26 3.9
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 25 5.2
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 5.2
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 5.2
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 5.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 6.8
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 25 6.8
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 25 6.8
SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomy... 25 9.0
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 140 bits (340), Expect = 9e-35
Identities = 61/110 (55%), Positives = 80/110 (72%)
Frame = +1
Query: 190 HAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 369
HA+N R++ + N+V +Y+++GN WK +HD V +DWAP +NRIVTCS D
Sbjct: 17 HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76
Query: 370 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 519
RNAYV+ + DG W TLVLLR+NRAAT V+WSP E+KFAVGSGAR+IS+
Sbjct: 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV 126
Score = 40.3 bits (90), Expect = 2e-04
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Frame = +1
Query: 157 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGN-DWKQTNNLVEHDLRVMGIDWA 333
TF D +TC W ++I + ++Y+K + WKQT L+ + + W+
Sbjct: 50 TFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
Query: 334 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR-INRAATCVKWSPMENKFAVGSGAR 507
PN ++ S R V + W + L R + + W P A G R
Sbjct: 110 PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR 168
Score = 33.5 bits (73), Expect = 0.020
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHI-YKKEGNDWKQTNNLVEHDLR--VMGIDWAPNTNRIVTCSV 366
W+ + + A + + Y ++ NDW + +L + LR ++ +DW PN +
Sbjct: 108 WSPNEDKFAVGSGARVISVCYFEQENDWWVSKHL-KRPLRSTILSLDWHPNNVLLAAGCA 166
Query: 367 DRNAYV 384
DR AYV
Sbjct: 167 DRKAYV 172
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 57.2 bits (132), Expect = 1e-09
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +1
Query: 193 AWNK-DRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVD 369
AW +R +A + ++ V I +K +DW+ T L H+ V I W+ N N + TCS D
Sbjct: 340 AWRPIERPVLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRD 399
Query: 370 RNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGS 498
++ ++W +D ++ VL + V W P E+ GS
Sbjct: 400 KSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVSGS 442
Score = 44.4 bits (100), Expect = 1e-05
Identities = 22/103 (21%), Positives = 43/103 (41%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 375
W+ + +N + ++ +G+DW T L H V + ++PN N + + D N
Sbjct: 431 WHPTEDLLVSGSYDNSICFWRDDGDDWALTCQLQGHTNTVWALAFSPNGNTLASADNDGN 490
Query: 376 AYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGA 504
++W + + T+ I R A +W + + GA
Sbjct: 491 VFLWIKISSNEDVATIDSTNILRPALQEEWKQQTSLPHIHKGA 533
Score = 38.7 bits (86), Expect = 5e-04
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = +1
Query: 181 ITCHAWNKDRSQIAFSPNNNEVHIYKK-EGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVT 357
+ C AW+ + + +A + V I++ E +++ L EH V + W P + +V+
Sbjct: 381 VKCIAWSCNGNYLATCSRDKSVWIWEATEDDEFDCLAVLQEHTQDVKVVTWHPTEDLLVS 440
Query: 358 CSVDRNAYVW-TQGDDGKWATTLVLLRINRAATCVKWSPMENKFA 489
S D + W GDD WA T L + +SP N A
Sbjct: 441 GSYDNSICFWRDDGDD--WALTCQLQGHTNTVWALAFSPNGNTLA 483
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +1
Query: 268 NDWKQTNNLVEHDLRVMGIDWAPNTNR----IVTCSVDRNAYVWTQGDDGKW-ATTLVLL 432
N+W + L H + WAP+ + + S D+N ++WT+ DG W T L
Sbjct: 193 NNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEE 252
Query: 433 RINRAATCVKWSPMENKFAVGSG 501
+ A V WS N AV G
Sbjct: 253 KFPDIAWRVSWSLSGNILAVSCG 275
Score = 32.7 bits (71), Expect = 0.034
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Frame = +1
Query: 217 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT-NRIVTC-SVDRNAYVWT 390
+A + + V ++++ G W + + H V + WAP+ ++ C S D V
Sbjct: 70 LASASYDGHVIVWRETGGVWSELMDHTAHQASVNAVSWAPHEYGALLACASSDGKVSVLE 129
Query: 391 QGDDGKWATTLVLLRINRAATCVKWSP 471
DDG T + V WSP
Sbjct: 130 FKDDGS-CDTRIFTAHEPGCNAVCWSP 155
Score = 28.3 bits (60), Expect = 0.73
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 193 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNL 294
+W+ + +A S +N+V+++K+ N W+ N L
Sbjct: 262 SWSLSGNILAVSCGDNKVYLFKESQNKWQLLNEL 295
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 10/124 (8%)
Frame = +1
Query: 157 TFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWK----------QTNNLVEHD 306
T ++ + + C A++ D S A ++ +H+Y N + Q ++L+ H
Sbjct: 344 TMHNTLSAVNCAAFSDDASMFALGCADSSIHLYSSTNNGPQPLVGSQNEPLQKSSLIGHT 403
Query: 307 LRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKF 486
V G+ +P I++CS D +W++ D K +T + N V++SP F
Sbjct: 404 RPVFGVSISPQKEFILSCSEDGFTRLWSK--DTK-STIVKYAGHNAPIWDVQFSPFGYYF 460
Query: 487 AVGS 498
A S
Sbjct: 461 ATAS 464
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 217 IAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 387
+A S +N V +Y + K NL H L V+ +D + ++ +VTCS D+N +W
Sbjct: 549 VAASLLDNTVKVYYLDS--LKFFLNLYGHKLPVLSMDISYDSKLLVTCSADKNVKIW 603
Score = 28.3 bits (60), Expect = 0.73
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 289 NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLR 435
++ H +M + + P+T TCS DR W DGK ++ LR
Sbjct: 613 SIFAHQDSIMEVTFQPDTYNFFTCSKDREVRYW----DGKSFDLILKLR 657
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.011
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +1
Query: 163 GDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNT 342
G A C AW+ D + S + + ++ K +L H+ +V +DW+P+
Sbjct: 429 GHVAAVYQC-AWSTDSRLLVSSSQDTTLKVWDVRSK--KMKFDLPGHEDQVFAVDWSPDG 485
Query: 343 NRIVTCSVDRNAYVWT 390
R+ + D+ +W+
Sbjct: 486 QRVASGGADKAVRIWS 501
Score = 26.6 bits (56), Expect = 2.2
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Frame = +1
Query: 181 ITCHAWNKDRSQIAFSPNNNEVHIY-KKEGNDWKQTNNLVEHDLRVMGIDW-----APNT 342
++C AW D S IA +N + + K+G+ L H +M + W AP++
Sbjct: 180 VSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIGDA--LRRHTKPIMALCWQPLHLAPDS 237
Query: 343 N--RIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRA-ATCVKW 465
+ + S D +W + K T L L + A TCV+W
Sbjct: 238 GPYLLASGSKDNTVRIW----NVKLRTLLFTLSGHTAPITCVRW 277
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 33.1 bits (72), Expect = 0.026
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +1
Query: 322 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSG 501
+DW+ N N +V +++RN YVW D G + L + VKWS + +VG G
Sbjct: 186 LDWS-NLN-VVAVALERNVYVW-NADSGS-VSALAETDESTYVASVKWSHDGSFLSVGLG 241
Query: 502 ARLISI 519
L+ I
Sbjct: 242 NGLVDI 247
Score = 31.5 bits (68), Expect = 0.079
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Frame = +1
Query: 193 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVT--CS 363
AW D Q+A N+N V I+ + K T H+ V + W P +N + T +
Sbjct: 311 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNLLATGGGT 368
Query: 364 VDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 471
+D+ + W + T + T + WSP
Sbjct: 369 MDKQIHFWNAATGARVNT----VDAGSQVTSLIWSP 400
Score = 26.6 bits (56), Expect = 2.2
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = +1
Query: 166 DSCAPITCHAWNKDRSQI----AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWA 333
D+ + +T W+ +I F NN + Y G KQ + + HD RV+ +
Sbjct: 388 DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-KQVD-IPAHDTRVLYSALS 445
Query: 334 PNTNRIVTCSVDRNAYVW 387
P+ + T + D N W
Sbjct: 446 PDGRILSTAASDENLKFW 463
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 32.7 bits (71), Expect = 0.034
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAP-NTNRIVTCSVDR 372
WN D SQ A N+N V ++K G+D +Q + + + V + + P + + T +
Sbjct: 330 WNHDGSQFASGGNDNRVCLFK--GSDLRQPLYVWQQNAAVKALSFCPWQRSLLATGAGSH 387
Query: 373 NAYV-WTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLISI 519
+ ++ + +GK + L T + WSP +F+V G L ++
Sbjct: 388 DKHIRFYNCFNGK---KIDELYCGAQITSIHWSPKYREFSVTFGYSLETV 434
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 32.7 bits (71), Expect = 0.034
Identities = 16/65 (24%), Positives = 35/65 (53%)
Frame = +1
Query: 193 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 372
A++ +A S +++V IY+ + L EH V+ ++W+ + ++ + SVD+
Sbjct: 37 AFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKVASGSVDK 96
Query: 373 NAYVW 387
+A V+
Sbjct: 97 SAKVF 101
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 32.7 bits (71), Expect = 0.034
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 292 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW-TQGDDGKWATT 420
L+ H+ VM +DW P I++ S D + VW + G W T
Sbjct: 264 LMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPDTNTGIWVVT 307
Score = 29.1 bits (62), Expect = 0.42
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 375
WN + + + ++K++ W Q ++ H V G+ W P ++ D+
Sbjct: 334 WNPNGNCVVCWGRTGGWRLWKQDAGQWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQT 393
Query: 376 AYVWTQ-GDDGKW 411
++ + D W
Sbjct: 394 TRLFARFKKDNAW 406
Score = 27.9 bits (59), Expect = 0.97
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +1
Query: 226 SPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDG 405
+P + + +Y E W Q L H L V I ++P+ I++ DR + Q ++
Sbjct: 554 TPEHAVIRLY--ETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLHEQAENL 611
Query: 406 KWATTLVLLRI-NRAATCVKWSPMENKFAVGSGAR 507
++ +R W+P E + + +R
Sbjct: 612 LDYNNFASIKAHSRIIWDASWAPKEMGYFFATASR 646
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 32.3 bits (70), Expect = 0.045
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 220 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 399
A + ++N ++ + G ++ +L H V + ++PN R + D YV+
Sbjct: 163 ATASDDNSINFF--HGTPYRFNRSLRVHSKFVYDVRYSPNDERFASAGADGKVYVF---- 216
Query: 400 DGKWATTLVLLRINRAAT-CVKWSPMENKFAVGS 498
DGK + + ++ + + WSP ++F S
Sbjct: 217 DGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSS 250
Score = 31.5 bits (68), Expect = 0.079
Identities = 17/81 (20%), Positives = 30/81 (37%)
Frame = +1
Query: 139 KMAQTLTFGDSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVM 318
K + + AP T ++ +A N V I+ G D N + R+
Sbjct: 47 KQENCFQYNEHTAPTTVARFSPSGYYVASGDNQGNVRIWDCAGEDKILKNQVTAISGRIT 106
Query: 319 GIDWAPNTNRIVTCSVDRNAY 381
+DW ++ RI+ + Y
Sbjct: 107 DLDWDGDSQRIIAVGEGKERY 127
Score = 29.9 bits (64), Expect = 0.24
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 250 IYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 387
+Y +G Q + H + I W+P++++ VT S + +W
Sbjct: 213 VYVFDGKTGDQVYEIDAHKGSIFSISWSPDSSQFVTSSAGYSCKIW 258
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/66 (22%), Positives = 28/66 (42%)
Frame = +1
Query: 193 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 372
+WN + +A + + +HIY E K H L ++W + N +++ D
Sbjct: 529 SWNAKSTHLATASLDTNIHIYSVE-RPMKYIAMKNAHSLGATQVEWV-SENELLSTGSDA 586
Query: 373 NAYVWT 390
VW+
Sbjct: 587 AIKVWS 592
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = +1
Query: 292 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 471
L H+ V+ ++++PN + +C D+ +W + K +L+ + CV+W P
Sbjct: 217 LAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKK--KSLITINNVSPLNCVRWRP 274
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.10
Identities = 19/74 (25%), Positives = 32/74 (43%)
Frame = +1
Query: 277 KQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATC 456
K+ L+ H V I W+P+ +++CS D++ +W D L + + +C
Sbjct: 246 KRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILW----DAFTGEKLRDYKHGFSVSC 301
Query: 457 VKWSPMENKFAVGS 498
W P F GS
Sbjct: 302 CCWLPDGLSFITGS 315
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 31.1 bits (67), Expect = 0.10
Identities = 25/111 (22%), Positives = 42/111 (37%)
Frame = +1
Query: 181 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC 360
+ C W+ D + V ++ N+ K H++ V + ++PN ++ VT
Sbjct: 126 VRCAEWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ---AHEMEVRDVAFSPNDSKFVTA 182
Query: 361 SVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLI 513
S D + VW + L L V W P + A GS L+
Sbjct: 183 SDDGSLKVW---NFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLV 230
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 298 EHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 402
EH+L +G+ W+ N+ + S D+N YVW+ D
Sbjct: 269 EHNL--LGVAWSRNSRFVGAGSSDKNVYVWSATGD 301
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/78 (21%), Positives = 36/78 (46%)
Frame = +1
Query: 244 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 423
+ +YK +G T + HD ++ + + + ++T S D +W++GD G + L
Sbjct: 369 LRVYKVDGKAPVSTVSHA-HDNSIVALRYNLRISLLLTASSDTTVKLWSRGDAGAF-ECL 426
Query: 424 VLLRINRAATCVKWSPME 477
+ + C+ W+ E
Sbjct: 427 HVFSFSSPVNCIDWNLRE 444
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 30.3 bits (65), Expect = 0.18
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +1
Query: 256 KKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 387
+K +W+ L+ HD + + W+ ++ +V+ +D + VW
Sbjct: 118 EKHTENWRSYRRLLGHDNDIQDLCWSYDSQLVVSVGLDSSIIVW 161
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 29.9 bits (64), Expect = 0.24
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = +1
Query: 178 PITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDL-RVMGIDWAP-NTNRI 351
PI WN S++A S ++ V ++ + D+K T L V + W P +++R+
Sbjct: 26 PIRSLGWNLSGSRLASSSSSGSVLVWNSDRLDFKFTTELGNRGYGLVEQLVWDPTHSDRL 85
Query: 352 VTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMENKFAVGSGARLIS 516
+ + W D + A + + N WSP N S ++S
Sbjct: 86 MAVYAGKMIRFW----DFRSAKPIAEIESNYENIYATWSPSGNYCCASSRDDMLS 136
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 29.5 bits (63), Expect = 0.32
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -3
Query: 495 PDSKLVLHGRPFHASRCSVDTQKNKSS----CPFPIISLSPDVSITVNRTRNNTVGVGSP 328
PD K L R S+ QK SS F + + PD I R R+++ +
Sbjct: 433 PDDKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKI-PDSDICFTRRRSDSNRTWTV 491
Query: 327 INPHHSKVVFHKVVCLLP 274
I+PHHS+ + ++ +P
Sbjct: 492 IDPHHSQSFDNDILAEIP 509
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.32
Identities = 20/93 (21%), Positives = 37/93 (39%)
Frame = +1
Query: 193 AWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDR 372
A + D + + +V+++ E N+++ N +H +P+ I SVD
Sbjct: 66 ATSLDENVVVSCGFGQDVYVWNPETNEFRDLGNNAQHPSECWSSCISPDGQTIAFTSVDG 125
Query: 373 NAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 471
VW D K + L + C+ +SP
Sbjct: 126 RIAVWDNPSDCKISE---LDTKGKFGLCIDYSP 155
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.5 bits (63), Expect = 0.32
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = +1
Query: 166 DSCAPITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTN 345
D ITC A + D I ++ + I ++ + + H VMG+ TN
Sbjct: 206 DHVKEITCLAISNDGRWIVTGGLDHRIVI--RDSVTLEPQHCWKHHRDAVMGLAMRRGTN 263
Query: 346 RIVTCSVDRNAYVWT 390
+ +CS DR+ VW+
Sbjct: 264 EMFSCSADRSIKVWS 278
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.42
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +1
Query: 334 PNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL-LRINRA-----ATCVKWSPMEN-KFAV 492
P +N IVTCS D ++W + + T+ L +++ + ATC+ + P N +F V
Sbjct: 303 PPSNNIVTCSTDGLVHIWEPDMFSRPSETICLSSQVDSSSQCIPATCLSFIPENNMEFLV 362
Query: 493 GS 498
G+
Sbjct: 363 GA 364
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 178 PITCHAWNKDRSQIAFSPNNNEVHIYK 258
P+ AW ++ +A N VHIYK
Sbjct: 510 PLNKIAWQPEKRNLACGGLNGNVHIYK 536
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 292 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 387
L EH +++ + W+PN ++ T S D +W
Sbjct: 345 LDEHIRQIVAMAWSPNGYQLATSSADDTVKIW 376
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 426 NKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPH 316
NK S I SLSP ++ + N ++ +G+ +NPH
Sbjct: 408 NKESIKQRIPSLSPPITRSYNAKHRPSLVLGTSVNPH 444
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +1
Query: 178 PITCHAW--NKDRSQIAFSPNNNEVHIYKKEGND-WKQTNNLVEHDLRVMGIDWAPN 339
P C W ++ R Q N+ +IYK+ + WK+ L H + I WAP+
Sbjct: 170 PAFCVNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPS 226
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Frame = +1
Query: 322 IDWAPNTNR--IVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 471
++W P+ R + +AY++ Q GKW L + W+P
Sbjct: 174 VNWCPSRWREQYIAVGCMNDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAP 225
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV 354
W++ Q+A N+N + ++ + + + EH V I W+P+ I+
Sbjct: 257 WDRSLGQLASGGNDNNLFVWDYRSS--RPLHKFEEHTAAVKAIGWSPHQRGIL 307
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 301 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWSPME 477
H+ + G+ W + ++ + D N +VW D + + L + AA + WSP +
Sbjct: 248 HEQEICGLQWDRSLGQLASGGNDNNLFVW----DYRSSRPLHKFEEHTAAVKAIGWSPHQ 303
Query: 478 NKFAVGSGARL 510
G +
Sbjct: 304 RGILASGGGTI 314
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 456 ASRCSVDTQKNKSSCPFPIISLSPDVSITVNRTRNNTVGVGSPINPHHSKVVFH 295
A S T N + P PI +L PD T++ + ++ + +G+ PHHS + H
Sbjct: 142 ADNSSSSTTSNPNVAP-PISTL-PDPVATISSSSSSHLDMGAIHPPHHSSLPPH 193
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 292 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 390
L+ H V G ++P+ +++CS D +A +W+
Sbjct: 375 LLSHSGPVYGTTFSPDNKYLLSCSEDASARLWS 407
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = +1
Query: 187 CHAWNKDRSQIAFSPNNNEVH-----IYKKEGNDW-KQTNNLVEHD 306
CH+ + SQ+ SPN +E H + EGN+ + NN+V D
Sbjct: 66 CHSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSD 111
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 3.0
Identities = 7/25 (28%), Positives = 17/25 (68%)
Frame = -3
Query: 303 VFHKVVCLLPVISFLFVYVNFIIVW 229
+FH V +L ++ + +++N++ VW
Sbjct: 245 IFHPVTYILAIVVPINIFLNYLFVW 269
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 301 HDLRVMGIDWAPNTNRIVTCSVDRNAYVW 387
H LR+ + + P N ++ S+D++ VW
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVW 574
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = +1
Query: 301 HDLRVMGIDW-APNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPME 477
H V ++W N + + TCS+D + + W + + AT VKW+
Sbjct: 321 HTRAVTDMNWHRQNPDVLATCSIDSSVHCWDLRSPRFPVNS--FYDWHNGATQVKWNYKN 378
Query: 478 NKFAVGSGARLISI 519
S RL+ I
Sbjct: 379 PHILASSHGRLVRI 392
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYK-KEGNDWKQTNNLVEHDLRVMGIDW-APNTNRIVTCSVD 369
WN I S + V I+ + G+ T E+ ++ G+++ R++TC++D
Sbjct: 374 WNYKNPHILASSHGRLVRIWDDRYGSAPLHTIKTSENITKINGLEFNRACETRLLTCAMD 433
Query: 370 RNAYVW 387
R W
Sbjct: 434 RTVKFW 439
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +1
Query: 196 WNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRN 375
W+ D + + +N + +Y + + + +H V G+ W P IV+ S DR+
Sbjct: 136 WSVDSNFLIAGAMDNSLRLY--DAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESSDRS 193
Query: 376 AYVWTQGDDGK 408
++ ++ K
Sbjct: 194 ICLYEIQEEKK 204
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 295 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 429
V H L ++ I + N + +DR VW D +W T LVL
Sbjct: 592 VHHQLDILKIAVSENYKTFASVGLDRCLVVW---DLRQWCTKLVL 633
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 378 LRLDSRR*WEMGNYSCSSAYQPSSDLREMVSHGE-QVCCRV 497
LR D RR EM N+ C +PS + + G +V C V
Sbjct: 12 LRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIV 52
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +1
Query: 292 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAAT-CVKWS 468
L H V G++W N N + + D VW + ++ L + AA + WS
Sbjct: 370 LTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEE----KPLYSFHNHIAAVKAITWS 425
Query: 469 PMENKFAVGSG 501
P + G
Sbjct: 426 PHQRGILASGG 436
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 451 TCVKWSPMENKFAVGSGARLISI 519
TCV WSP A+G L+SI
Sbjct: 368 TCVTWSPDGKFIAIGGKDDLVSI 390
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +1
Query: 151 TLTFGDSCAPITCHAWNKDRSQIAFSPNNN 240
T+TFG H WN S + PN++
Sbjct: 6 TVTFGRKSNFCWTHFWNTQESYFVYDPNDH 35
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/73 (28%), Positives = 28/73 (38%)
Frame = +1
Query: 301 HDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMEN 480
H V+ W PN N + T D A VW GK L A T + +SP+
Sbjct: 299 HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQM--SAVTNLCFSPLGE 356
Query: 481 KFAVGSGARLISI 519
AV A + +
Sbjct: 357 SLAVTEQADFVQL 369
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 181 ITCHAWNKDRSQIAFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIV-T 357
ITC W+K ++ ++ +NN + N + L H L V I + + + ++ T
Sbjct: 192 ITCMNWSKSNHRMVYTADNNNLVYCYDIANLKTPLSVLSGHQLAVRSIKSSNSAHDLLAT 251
Query: 358 CSVDRNAYVW 387
S D + ++
Sbjct: 252 ASYDMTSRIF 261
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 220 QFDFYPCSMHDMLSARMSHQKLT 152
QF F PCS+HD+LS+ + K T
Sbjct: 182 QFPF-PCSLHDVLSSYLYLLKST 203
>SPAC26F1.07 |||2-methylbutyraldehyde reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 321
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 215 KLHSHQTIMKFTYTKRKEMTGSKQTTLWNTT 307
KL H+TI K +K + +TG+ W T
Sbjct: 231 KLIEHETIQKIAKSKGEGVTGATIAVSWAIT 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,636
Number of Sequences: 5004
Number of extensions: 46669
Number of successful extensions: 201
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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