Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    58   1e-09
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    56   4e-09
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    54   2e-08
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    50   2e-07
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    48   1e-06
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.56 
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   1.3  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    26   3.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   6.8  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   9.0  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   9.0  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   9.0  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 26/59 (44%), Positives = 38/59 (64%)
 Frame = -3

Query: 495 YVRCIXPNEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCLLP 319
           Y+RCI PNE+KEA K++ Q+V+ QLR  G+ E ++I   G+P       F +RY  L+P
Sbjct: 661 YIRCIKPNEEKEAWKFDNQMVVSQLRACGVLETIKISCAGFPSRWTFDEFVSRYYMLVP 719


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 55.6 bits (128), Expect = 4e-09
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = -3

Query: 495 YVRCIXPNEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCLLPH 316
           ++RCI PNE+K+   +N  LVL QLR  G+ E +RI R G+P  LP   F+ RY  +   
Sbjct: 648 FIRCIVPNEEKKMHTFNRPLVLGQLRCNGVLEGIRITRAGFPNRLPFNDFRVRYEIMAHL 707

Query: 315 P 313
           P
Sbjct: 708 P 708


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = -3

Query: 495 YVRCIXPNEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCL 325
           Y+R I PN+ K    Y++Q+VL Q++YLG+ E +RIRR G+        F  R+  L
Sbjct: 607 YIRTIKPNQTKSPNDYDQQMVLHQIKYLGLQENIRIRRAGFAYRQAFDTFAQRFAVL 663


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 24/58 (41%), Positives = 33/58 (56%)
 Frame = -3

Query: 495 YVRCIXPNEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCLL 322
           Y+RCI PNE+K    ++  +VL QLR  G+ E +RI   G+P       F  R+R LL
Sbjct: 642 YIRCIKPNEEKLPWTFSPPMVLSQLRACGVFETIRISSLGFPARFSYEEFAHRFRILL 699


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 25/57 (43%), Positives = 34/57 (59%)
 Frame = -3

Query: 495 YVRCIXPNEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCL 325
           +VRCI PN  K+    ++ LVL QLR  G+ E +RI + G+P  L    F+ARY  L
Sbjct: 660 FVRCIIPNNLKQPHNLDKSLVLHQLRCNGVLEGIRIAQTGFPNKLFYTEFRARYGIL 716


>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 60  YNANAANHLEIYALRSQFL*YNVFRTETHYCITTEIGRVVVPTRADSQNLVPPMNVASEL 239
           Y  NA +H++  +  +Q L  +  RT  ++     +G+V     + + N+VPP+ +A  +
Sbjct: 362 YYRNAYHHIDSISHVNQSLKEDALRTLPYWITVELVGKVREIDPSPNINIVPPLQLADIV 421

Query: 240 L 242
           L
Sbjct: 422 L 422


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
 Frame = +2

Query: 296 SGQLGLGCGSKHLYLAWNI------GVGRCTGYPSLRILTISFMPKYRSC 427
           S  +   C S+   LAWN+      G  R    P+L +LT+  MP    C
Sbjct: 231 SSSISATCTSEAERLAWNVYYALRAGCERLIILPNLLVLTLQIMPDKEEC 280


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -3

Query: 474 NEKKEAGKYNEQLVLEQLRYLGMNEIVRIRRDGYPVHLPTPMFQARYRCLLPHPR 310
           ++K  A       V      LG+N  ++ +     VHL  P  Q   +C++ HP+
Sbjct: 211 SKKSSANMIRHLTVCNDFLQLGLNPKLQAKNQQSSVHLKYPYLQ---QCIVIHPK 262


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 373 VPVPPDPHYLVHAQVPELFQHELLVVFTGLLLFIRXY 483
           VP+P D     H++    + H + ++ T LL+F+  Y
Sbjct: 705 VPIPKDVDEKGHSKCHRKYGHVIELICTLLLIFVVIY 741


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 33  YGLPGPIDIYNANAANHL 86
           YG+P   ++Y    ANHL
Sbjct: 632 YGMPNKCEVYEQTDANHL 649


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 175 TLPISVVMQ*CVSVRKTLYYKN*DLRAYISRWLAA 71
           TLP+S+ +      R+ +Y K+  L A +  W+A+
Sbjct: 149 TLPLSISLMDSYVSRRVVYCKHIQLVACVCLWIAS 183


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  GLPGPIDIYNANAANHLEIYALRSQFL 116
           G+PGPI+ + A+ A  +  Y  R  FL
Sbjct: 266 GVPGPIEYFFASDATPIIEYTKRVMFL 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,804
Number of Sequences: 5004
Number of extensions: 47400
Number of successful extensions: 128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)