Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.36 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 282 ILTRYPGSWVSGAAVNTCTWPGTSGSA 362
           I+T Y  + +SG A    TW G S SA
Sbjct: 293 IVTSYCKTCISGRAFQVLTWLGYSNSA 319


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 362 RCTGYPSLRILTISF 406
           +C+GYPS+R  T S+
Sbjct: 21  KCSGYPSIRQGTTSY 35


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = -3

Query: 105 ILERISQGGWRHLRCRCLWAPVTHKHNVSR 16
           ++ R    GWR LR    W P    +   R
Sbjct: 125 VVGRKKSSGWRKLRNIVHWTPFFQTYKKQR 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,185
Number of Sequences: 438
Number of extensions: 3673
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)