Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    28   0.97 
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   1.7  
SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    27   1.7  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   2.2  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   3.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.0  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.0  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.0  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   9.0  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +3

Query: 57  LYNKTNRYFKTRLLTVIEFKMCYLNIIFLTCALLVTSIAQNSSKDAIGFPEMEENPDLRN 236
           +Y+ TN   +TR +    FK C   I+F+        +   + ++AI   E   N DL  
Sbjct: 140 IYDATNGTRRTRRILYDRFKNCGFKILFIESLCNKEDVINANIQEAIHVSEEFRNWDLEM 199

Query: 237 KE 242
            E
Sbjct: 200 AE 201


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -2

Query: 331 QSQIQSSFWSPG*NNSLSGHLAGMNTGWRFSLFLKSGFSSISGNPI 194
           Q + + S WS   +    GH   +NT   F L L   F+ +  N I
Sbjct: 451 QEEAKKSLWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSI 496


>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -2

Query: 304 SPG*NNSLSGHLAGMNTGWRFSL-FLKSGFSSISGNPIASFELFCAIDVTNNAHVRNIIF 128
           SP   NS+     G N  W   L +L   +  +SG+ +A+F L   I  T  AHV  I+F
Sbjct: 416 SPIVGNSMVTVANGHN--WMCILNYLTDSYPLLSGSAVAAFTLPSFIGATVFAHVSQIMF 473


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 241 SLFLKSGFSSISGNPIASFELFCAID 164
           + F++SG S++ GN + ++EL   ID
Sbjct: 128 NFFVESGESTLEGNNVINYELAAGID 153


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = -1

Query: 413 ILSDFTWSLSKSWPAFVCSWVI*VRWSAITNPVVFLVSRI 294
           I+S   W  S+  P +  +W++ +  +    P+++LV+R+
Sbjct: 469 IISPQLWQ-SRDAPRYYPAWIVQIVVAWFVTPIIYLVARV 507


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
 Frame = +3

Query: 153 LLVTSIAQNSSKDAIGFPEMEENPDLRNKENRQPVFIPARCPDNELFYPGDQKDDWICDC 332
           +  TS   NS   +I  PE ++  +L+NK    P     +   N+   P D     I   
Sbjct: 149 MFTTSRRNNSISGSITIPESDQQINLQNKFLSTP---SIKNNANKSLSPQDSIS--IFGT 203

Query: 333 RPANLYHPGTDK--CW 374
            P N Y   TD   CW
Sbjct: 204 SPFNAYQQNTDNFVCW 219


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = +1

Query: 10  DFYFLTVTIV--IVEHFCYITK 69
           D YF+ + I+  I++H C ITK
Sbjct: 503 DNYFINIFIIFLIIKHMCLITK 524


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -1

Query: 308  LVSRI-EQFVVRTSCRNEHWLAIL-FISQIGIFFHFRES 198
            ++SR+ E+F +R     E WLA++ + + I  FF   ++
Sbjct: 928  IMSRMQEKFYIRFDSNYEQWLALIKYTASIDCFFSLSQA 966


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 105 IEFKMCYLNIIFLTCALLVTSIAQNSSKD 191
           + F +CY   IF+  A+   ++ +N  +D
Sbjct: 439 VSFVVCYCVAIFIIIAIYAVNVRENRRRD 467


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 10  DFYFLTVTIVIVEHFCYITKRI 75
           D YF  + +++   +CY+T +I
Sbjct: 404 DIYFTLIVLIMTLCYCYVTVKI 425


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 211 ISGNPIASFELFCAIDVTNNAHV 143
           I G PI +F  F  +D+  N H+
Sbjct: 124 IDGRPITNFASFNFLDLAENKHI 146


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 228 NRDFLPFPGIR*HLLSCFVLLMLLTMHMLEI 136
           +RD L +  +  H++ C + L+L T   +E+
Sbjct: 543 SRDLLAYAILFIHIMVCILFLLLSTQRFMEV 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,090
Number of Sequences: 5004
Number of extensions: 51485
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)