Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    30   0.98 
01_06_1665 - 38988014-38988078,38988459-38988546,38988921-389890...    28   5.2  
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970...    28   5.2  
01_01_0633 - 4767914-4768020,4768057-4768085,4768590-4768745,476...    27   6.9  

>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/64 (26%), Positives = 33/64 (51%)
 Frame = -3

Query: 453  ARKPELLNFVEELDTVRLHMVLVEKLASICLFLGDIGSLVCNHKSSRLFGLPDRTIRCPD 274
            +R P+L+  ++EL ++ +   +++    IC+F+ DI  + CN +S     L  R     D
Sbjct: 1058 SRFPDLVGMIKELCSIEVSSFILDAEVDICVFVFDI--MFCNGQSLLNCSLRQRRKYIHD 1115

Query: 273  ILPE 262
            +  E
Sbjct: 1116 LFQE 1119


>01_06_1665 -
           38988014-38988078,38988459-38988546,38988921-38989082,
           38989268-38989359,38989896-38990007,38990040-38990181,
           38990448-38990668
          Length = 293

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 125 FEYYISNMCIVSNINSTKQLKRCYRIPGNGRK 220
           ++Y+ + + + S  N TK LK+ +  P  GRK
Sbjct: 173 YDYFSTALYLYSKYNVTKALKKAHIYPRGGRK 204


>01_01_1206 -
           9702128-9702184,9702272-9702323,9702410-9702471,
           9702578-9702665,9703027-9703095,9703224-9703281,
           9703895-9703996,9704075-9704179,9704273-9704624,
           9706005-9706100,9706427-9706501,9707192-9707370,
           9707501-9707740,9707922-9708017,9708193-9708306,
           9708428-9708527
          Length = 614

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +3

Query: 270 RCPDNELFYPGDQKDDWICDCRPANLYHPGTDKC 371
           RC D    +  D+ +D  CDC P     PGT  C
Sbjct: 44  RCRDGSGRFARDKLNDDFCDC-PDGTDEPGTSAC 76


>01_01_0633 -
           4767914-4768020,4768057-4768085,4768590-4768745,
           4768835-4768983,4769106-4769638,4769900-4770068,
           4770255-4770347,4770641-4770698,4771392-4771471,
           4771548-4771715,4772090-4772242,4772756-4772884,
           4772996-4773085,4773990-4774129,4774683-4774814,
           4774916-4775087
          Length = 785

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 125 FEYYISNMCIVSNINSTKQLKRCY 196
           F+Y+IS +  ++ +N   Q+KRCY
Sbjct: 545 FDYHISLIPSLNRVNLVYQIKRCY 568


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,255,924
Number of Sequences: 37544
Number of extensions: 309126
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)