Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0677 + 10343089-10343604,10344316-10344462,10344539-103446...   146   1e-35
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239...   144   3e-35

>03_02_0677 +
           10343089-10343604,10344316-10344462,10344539-10344643,
           10345411-10345509,10345662-10345814
          Length = 339

 Score =  146 bits (353), Expect = 1e-35
 Identities = 71/136 (52%), Positives = 94/136 (69%), Gaps = 1/136 (0%)
 Frame = +1

Query: 103 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 279
           MP L CR Y+ ++PEV+  VM+ V+ IA+MGAYV LLEYNNIEGM              +
Sbjct: 1   MPNLECRMYEPRFPEVDAAVMIQVKHIADMGAYVSLLEYNNIEGMILFSELSRRRIRSIS 60

Query: 280 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 459
            LI+VG+ EP +V+RVD++KGYIDLSKRRVS E+ + C +RY K+K V+SI+RHVAE L 
Sbjct: 61  SLIKVGRQEPAIVLRVDRDKGYIDLSKRRVSEEEAHACEDRYNKSKLVHSIMRHVAETLG 120

Query: 460 YETSEQLEELYKKTAW 507
            +    LE LY++  W
Sbjct: 121 ID----LEPLYQRIGW 132


>07_03_1773 -
           29422660-29422806,29423103-29423201,29423811-29423915,
           29423990-29424136,29424436-29424954
          Length = 338

 Score =  144 bits (350), Expect = 3e-35
 Identities = 73/136 (53%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
 Frame = +1

Query: 103 MP-LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXN 279
           MP L CR Y+  +PEVE  VM+ V+ +AE+GAYV LLEYNNIEGM               
Sbjct: 1   MPNLECRMYEAPFPEVETAVMIQVKHLAELGAYVSLLEYNNIEGMILYSELSRRRIRSIP 60

Query: 280 KLIRVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLH 459
            LI+VG+ EP VV+RVD +KGYIDLSKRRVS  D   C +RY+K+K V+SI+RH+AE LH
Sbjct: 61  SLIKVGRQEPAVVLRVDHDKGYIDLSKRRVSHHDRRTCEDRYSKSKFVHSIMRHLAETLH 120

Query: 460 YETSEQLEELYKKTAW 507
            +    LE LY + AW
Sbjct: 121 LD----LEPLYHRIAW 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,378
Number of Sequences: 37544
Number of extensions: 240232
Number of successful extensions: 544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)