Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical...   173   8e-44
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    30   1.2  
AY313177-1|AAP79302.1|  676|Caenorhabditis elegans myotubularin-...    30   1.2  
Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical p...    29   2.7  
AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    29   2.7  

>AC087079-10|AAK27873.2|  342|Caenorhabditis elegans Hypothetical
           protein Y37E3.10 protein.
          Length = 342

 Score =  173 bits (420), Expect = 8e-44
 Identities = 80/136 (58%), Positives = 103/136 (75%)
 Frame = +1

Query: 109 LSCRFYQEKYPEVEDVVMVNVRSIAEMGAYVHLLEYNNIEGMXXXXXXXXXXXXXXNKLI 288
           + CRFY+ ++P+VE+ V+ NV+ IA+MGAYV L EYN+ EGM              NKLI
Sbjct: 1   MKCRFYENQFPDVEETVVANVKMIADMGAYVRLSEYNDKEGMILLSELSRRRIRSVNKLI 60

Query: 289 RVGKTEPVVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYET 468
           RVG++E VVVIRVDK+KGYIDLSKRRV  +D+ +C ER+A AK VNSILRHVAE + Y T
Sbjct: 61  RVGRSESVVVIRVDKDKGYIDLSKRRVYQKDLKQCDERFANAKMVNSILRHVAEQVGYTT 120

Query: 469 SEQLEELYKKTAWYFE 516
            E+LE+LY+KTAW+F+
Sbjct: 121 DEELEDLYQKTAWHFD 136


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 310 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 489
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 490 --YKKTAWYFE 516
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>Z81546-8|CAB04456.1|  676|Caenorhabditis elegans Hypothetical
           protein F53A2.8a protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 310 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 489
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 490 --YKKTAWYFE 516
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 310 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 489
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 175 MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 229

Query: 490 --YKKTAWYFE 516
             +++  W  E
Sbjct: 230 RGWRRLDWNSE 240


>AY313177-1|AAP79302.1|  676|Caenorhabditis elegans
           myotubularin-related protein MTM-6A protein.
          Length = 676

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 310 VVVIRVDKEKGYIDLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEEL 489
           ++VIR    +    L  R  S +D+Y+  +R AK  +VN     V ELL +E  E +E++
Sbjct: 69  MLVIRCKHFQVITLLISRDKSCQDLYETLQRAAKPVSVN-----VTELLAFENREPVEDV 123

Query: 490 --YKKTAWYFE 516
             +++  W  E
Sbjct: 124 RGWRRLDWNSE 134


>Z83233-11|CAB05757.2|  292|Caenorhabditis elegans Hypothetical
           protein K06B4.9 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 429 RVYCFRFCIAFCALVYIFSR-YTTFR*VYVSFFFVHSDY 316
           R Y +  CI FCA+ Y FS+ +  +   + SF F +SD+
Sbjct: 124 RNYLWITCIIFCAVCYEFSKCFLKYNPNHWSFEFENSDF 162


>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 486 FFQLLRSFIMEELCYMSQDRVYC-FRFCIAFCALVYI 379
           FFQ    FI++     ++ +  C + FCI FC  + I
Sbjct: 133 FFQFFERFILDNSELFNRLKAVCKYSFCIVFCVFITI 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,399,181
Number of Sequences: 27780
Number of extensions: 228236
Number of successful extensions: 606
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)