Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G06f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.12 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 327 HSDYDNRFSLSHSDQFVNG-SDTSSGKLR*QD 235
           H+D  N  SL+H DQ   G + T SGK R Q+
Sbjct: 795 HTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQN 826


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 394 CTCIYLQPIHDVSISLCILFLCP 326
           C CIY+Q I+         +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +1

Query: 349 DLSKRRVSAEDIYKCTERYAKAKAVNSILRHVAELLHYETSEQLEELYKKTAWYF 513
           D+ +    ++ I + TE   K   ++S++    + LHYET   +    ++  W +
Sbjct: 678 DICQLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLY 732


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 343 YIDLSKRRVSAEDIYKCTERYAKAKAVNSIL 435
           + ++  RR   E +YK  E + + +A  SIL
Sbjct: 318 HAEVVARRCLCEYLYKQLELHTEDRAAESIL 348


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 358 KRRVSAEDIYKCTERYAKAK 417
           KR   AE  YK  +R+AK +
Sbjct: 140 KRSKKAEAKYKARQRFAKVE 159


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -3

Query: 426 VYCFRFCIAFCALVYIFSR 370
           ++ F +CI    ++Y +S+
Sbjct: 215 IFTFSYCIPMILIIYYYSQ 233


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 468 SFIMEELCYMSQDRVYCFRF 409
           +++ E L  + QDR YC R+
Sbjct: 458 TYLWEFLLKLLQDREYCPRY 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,411
Number of Sequences: 438
Number of extensions: 2490
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)