Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333G03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 237 5e-64
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p... 50 3e-07
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 48 1e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 42 6e-05
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 42 6e-05
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 38 7e-04
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 34 0.015
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 33 0.026
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 32 0.060
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.079
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 31 0.10
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 31 0.14
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 30 0.24
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 29 0.32
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 2.2
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 3.9
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 3.9
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 3.9
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 3.9
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 26 3.9
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 5.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 5.2
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 6.8
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 25 6.8
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 6.8
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 25 9.0
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 9.0
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 9.0
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 237 bits (581), Expect = 5e-64
Identities = 104/140 (74%), Positives = 129/140 (92%)
Frame = +3
Query: 96 MKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG 275
M+KKVLLMG+SGSGK+SMRSI+F+NY+A+DTRRLGATID+EHSHVRFLGNLVLNLWDCGG
Sbjct: 1 MRKKVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGG 60
Query: 276 QEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPEARIFCL 455
QEAFMENY ++QRD+IFRNV+VLIYVFDVESRE E+D+ +++CLEA + NSP+AR+FCL
Sbjct: 61 QEAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQARVFCL 120
Query: 456 VHKMDLVAEEQREEIFRARE 515
+HKMDLV E+ R+ +F R+
Sbjct: 121 IHKMDLVQEDLRDLVFEERK 140
>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 314
Score = 49.6 bits (113), Expect = 3e-07
Identities = 32/128 (25%), Positives = 62/128 (48%)
Frame = +3
Query: 102 KKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE 281
+K++LMG SGK+S++ ++F +T L +T + H+ + ++WD GQ
Sbjct: 4 RKIILMGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHISSF--IDFSVWDFPGQV 61
Query: 282 AFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSPEARIFCLVH 461
+ F ++IF V LI+V D + ++ + + + N P I +H
Sbjct: 62 DVFDAAF--DFESIFTQVGALIFVIDAQDDYLDALARLHVTVARVVTIN-PNICIEVFIH 118
Query: 462 KMDLVAEE 485
K+D +++E
Sbjct: 119 KVDGLSDE 126
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 47.6 bits (108), Expect = 1e-06
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Frame = +3
Query: 105 KVLLMGKSGSGKTS-MRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE 281
K++L+G G+GKT+ ++ + + + LG + H H F G + N+WD GQE
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNF-GEICFNVWDTAGQE 69
Query: 282 AFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQNSP 434
RD + + I +FDV SR K++ ++ L + +N P
Sbjct: 70 K-----LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIP 115
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 41.9 bits (94), Expect = 6e-05
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Frame = +3
Query: 105 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN---LVLNLWDCGG 275
KV+++G+SG GKTS+ + ++D + ATI + L + + L LWD G
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYK---ATIGADFLTKEVLVDDKVVTLQLWDTAG 66
Query: 276 QEAFMENYFASQRDNIFRNVEVLIYVFDV-ESREMEKDMHYYQSCLEAILQNSPEARIFC 452
QE F A +R + + V+DV S+ E + L ++PE F
Sbjct: 67 QERFQSLGVA-----FYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFI 121
Query: 453 LV-HKMDLVAEEQREEIFRAR 512
L+ +K+D+ EEQ+ + +++
Sbjct: 122 LLGNKVDV--EEQKRMVSKSK 140
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 41.9 bits (94), Expect = 6e-05
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +3
Query: 84 FFSKMK---KKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLV 251
F SK K +K++++G +GKTS+ ++ Y + TI + H F+ GN +
Sbjct: 5 FGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYE---PTIFENYIHDIFVDGNSI 61
Query: 252 -LNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAILQN 428
L+LWD GQE + + R + + V++ F V+SR+ +++ L + N
Sbjct: 62 ELSLWDTAGQEEYDQ-----LRSLSYSDTHVIMICFAVDSRDSLENV--ITKWLPEVSSN 114
Query: 429 SPEARIFCLVHKMDLVAEEQRE 494
P ++ + K DL ++ +
Sbjct: 115 CPGVKLVLVALKCDLRGADEEQ 136
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 38.3 bits (85), Expect = 7e-04
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 78 EHFFSKMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVL 254
+ F K + ++L++G +GKT++ + I +G ++ VE+ ++ F
Sbjct: 10 QSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISF------ 63
Query: 255 NLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMH 392
+WD GGQ+ + + F+N + +I+V D RE + H
Sbjct: 64 TVWDVGGQDKIRPLW-----RHYFQNTQGIIFVVDSNDRERISEAH 104
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 33.9 bits (74), Expect = 0.015
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Frame = +3
Query: 105 KVLLMGKSGSGKTSMRSIIFANYIARDTRR-LGATIDVEHSHVRFLGNLV-LNLWDCGGQ 278
KV+++G SG GKT + + +R+ + +GA D V LV L LWD GQ
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGA--DFLTKDVVVDDKLVTLQLWDTAGQ 67
Query: 279 EAFMENYFASQRDNIFRNVEVLIYVFDV-ESREMEKDMHYYQSCLEAILQNSPEARIFCL 455
E F A +R + + V++V S+ + ++ Q L Q+ +
Sbjct: 68 ERFQSLGMA-----FYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV 122
Query: 456 VHKMDLVAEEQREEIFRA 509
+++D A ++ + RA
Sbjct: 123 GNQIDKDASKRAVSLHRA 140
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 33.1 bits (72), Expect = 0.026
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = +3
Query: 87 FSKMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATID-VEHSHVRFLGNLVLNLW 263
FS + ++L++G +GKT++ + N +G ++ V + +++F N+W
Sbjct: 17 FSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKF------NVW 70
Query: 264 DCGGQE---AFMENYFASQRDNIF 326
D GGQ+ +YF + IF
Sbjct: 71 DVGGQDKIRPLWRHYFTGTKGLIF 94
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.9 bits (69), Expect = 0.060
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 105 KVLLMGKSGSGKTS-MRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE 281
KV ++G S GKTS M + + ++ T+ LG + +R + ++WD GGQ
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNT-EITFSIWDLGGQR 70
Query: 282 AFM 290
F+
Sbjct: 71 EFV 73
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.079
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +3
Query: 105 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQE 281
K+LL+G SG GK+ + + FA+ ++ +D + G V L +WD GQE
Sbjct: 10 KLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQE 68
Query: 282 AFMENYFASQRDNIFRNVEVLIYVFDVESRE 374
F + + +R +I V+DV ++
Sbjct: 69 R-----FRTITSSYYRGAHGIIIVYDVTDQD 94
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 31.1 bits (67), Expect = 0.10
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Frame = +3
Query: 105 KVLLMGKSGSGKTSMRSIIFAN-YIARDTRRLGATIDVEHSHVRF-LGN----LVLNLWD 266
K++L G SG+GK+ + N + + + +G ID + +GN + L +WD
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVG--IDFASRIISVGMGNQQKRIKLQIWD 68
Query: 267 CGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 419
GQE F S N +R + V+DV +++ +++ + S + A+
Sbjct: 69 TAGQEK-----FRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAM 114
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 30.7 bits (66), Expect = 0.14
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +3
Query: 87 FSKMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEH-SHVRFLGNLV--LN 257
FS K K++ +G+ GKTS+ + + + ATI ++ S +L + L
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQ---ATIGIDFLSKTMYLEDRTVRLQ 63
Query: 258 LWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDV 362
LWD GQE F S + R+ V I V+D+
Sbjct: 64 LWDTAGQER-----FRSLIPSYIRDSSVAIIVYDI 93
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 351 VFDVESREMEKDMHYYQSCLEAILQNSPEARIFCLVHKMDLVAE 482
+++++S E+ +DM + L ++ P R+FCLV + L E
Sbjct: 1144 IYNLDSMEIFQDMSLKEGPLSKVVWTRPMIRLFCLVWRCLLAKE 1187
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 99 KKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHV 230
K+ VLL+G +G GKT++ I+ A + ++ + A D E+ +
Sbjct: 1186 KEPVLLVGDTGCGKTTVCQIL-AECLHKELHIINAHQDTENGDI 1228
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 29.5 bits (63), Expect = 0.32
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 387 MHYYQSCLEAILQNSPEARIFCLVHKMDLVAEEQREEI 500
+ Y+ SC E IL NS + R+F + K++ + + E I
Sbjct: 491 LKYWLSCYERILPNSADERVFLVRSKLESLLTRRAEII 528
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 105 KVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQE 281
K+LL+G SG GK+ + + F+ + ID + + G + L +WD GQE
Sbjct: 11 KLLLIGDSGVGKSCLL-LRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 282 AF 287
F
Sbjct: 70 RF 71
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 363 ESREMEKD-MHYYQSCLEAILQNSPEARIFCLVHKMDLVAEEQREEIFRAREED 521
ES E E+D + YQ LE + + PE F + DL+ E A+E D
Sbjct: 110 ESSEEEEDGLESYQKQLEGLKEKDPEFYKFLEQNDQDLLEFNAAETDAMAKEID 163
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = -2
Query: 364 STSKTYIRTSTFLNILSLCDAK*FSMKAS*PP--------QSHKLRTKLPRKRTC 224
ST TY ST+ NIL+ D + + PP S+ RT+ P R+C
Sbjct: 263 STFNTYFPNSTYQNILNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNARSC 317
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 107 LFLHFGKKMF*VRGSNLCFLFLLTLNVMLTC 15
LFLH K+ + + C LFLLT ++ TC
Sbjct: 8 LFLHLSKEFY-----DCCGLFLLTFFLLTTC 33
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 99 KKKVLLMGKSGSGKTSMRSIIFANYIARD 185
++KV ++G SGSGK+++ ++ Y + D
Sbjct: 1128 REKVAIVGISGSGKSTLVELLRKTYPSED 1156
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 174 IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEAFMENYFASQRDNI 323
+ RD+R+ + ID+ SHV LG VL + G + Q+D I
Sbjct: 491 LMRDSRKRPSAIDLLSSHVIRLGTAVLPPVEQGTFSKSARPSYGGQQDGI 540
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +3
Query: 348 YVFDVESREMEKDMHYYQSCLEAILQNSPEARIFCLVH 461
YV E + KD HY +A+LQ C +H
Sbjct: 83 YVSSYEPSQKFKDGHYILEMQDAVLQRDDPEPDDCFIH 120
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +3
Query: 69 PDLEHFFSKMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG 242
PDL + + +LL G G+GKT + A +A ++R + +I +FLG
Sbjct: 482 PDLFQGLREPARGMLLFGPPGTGKT-----MLARAVATESRSVFFSISASSLTSKFLG 534
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 108 VLLMGKSGSGKTSMRSIIFANYIARDTRRL 197
V+++G SGSGK+++ + +F+ ++ RL
Sbjct: 35 VMVVGPSGSGKSTLINTLFSAHLMDSKGRL 64
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +3
Query: 102 KKVLLMGKSGSGKTSMRSII 161
K LMG+SG+GKT++ +++
Sbjct: 912 KLTALMGESGAGKTTLLNVL 931
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 243 NLVLNLWDCGGQEAFMENYFASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAIL 422
N ++NL+DC GQ + F IF +E ++ + ++ +K H QS L +L
Sbjct: 627 NALMNLYDCQGQS---NSPFWMV---IFEPLESILVEWSAKNLRPKKPYHKSQSYLSYLL 680
Query: 423 Q 425
Q
Sbjct: 681 Q 681
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 399 GSNAYLFPFHDFLHQK 352
GSN Y FP H +L+ K
Sbjct: 293 GSNGYAFPIHLYLNMK 308
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/22 (36%), Positives = 18/22 (81%)
Frame = +3
Query: 96 MKKKVLLMGKSGSGKTSMRSII 161
M +V ++GK+G+GK+++ ++I
Sbjct: 415 MDSRVAIVGKNGTGKSTLLNLI 436
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 209 NCCSEASCIPCYIIGEYDRPHTGFTR-TTFSH 117
+C + +S +PCYI+ P + F R +T SH
Sbjct: 7 HCFTSSSSLPCYILRHL--PFSNFNRYSTASH 36
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -1
Query: 143 GFTRTTFSH**YLFLH---FGKKMF*VRGSNLCFLFLLTLNVMLTC 15
GF + + FLH FG F V LC ++T+ +++ C
Sbjct: 516 GFVKLDYFSIFITFLHVCSFGSNSFTVWEDRLCHFLIITIGLVMFC 561
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 300 FASQRDNIFRNVEVLIYVFDVESREMEKDMHYYQSCLEAI 419
F+ RD++ +N L+Y+F + DM Y + C+++I
Sbjct: 167 FSHIRDSLLQN---LLYMFTKKRLYEPTDMKYVEVCVDSI 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,793
Number of Sequences: 5004
Number of extensions: 50694
Number of successful extensions: 178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -