Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -3

Query: 444  SWLLESSVKSPQDMTGSNAYLFPFHDFLHQKHISELQR 331
            ++ + S  K+P  + G    + PF  F H + ++E++R
Sbjct: 957  NFYMPSEPKAPMILVGPGTGIAPFRGFWHHR-LAEIKR 993


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 78  LGQGFKSLFFIFANSQCYVNLY 13
           LG+ +  L +  A SQC++N++
Sbjct: 661 LGKAY--LMYAIAGSQCFINIW 680


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 416 DFTELSRSQDILFSTQNGLS 475
           D+ ++ RS D+LFST + L+
Sbjct: 117 DWCDVWRSLDVLFSTASILN 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,267
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)