Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   4.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   4.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   5.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = -2

Query: 352 SPPPDEWGPSSN--FCM 308
           SPPP++W P     FC+
Sbjct: 415 SPPPEDWKPLDKCYFCL 431



 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 384 VESHGQLRMMHHHLQMNGV 328
           ++ H  L+  HHHLQ   V
Sbjct: 138 LQRHHHLQNHHHHLQSTAV 156



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 423 RWK*FQEGLFHPLVESHGQLRMMHHHL 343
           RWK +Q+ L+     S       HH L
Sbjct: 45  RWKQYQDTLYSGTRSSESLTAQAHHRL 71


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
 Frame = -2

Query: 313 CMRCCTSISPGCSCVVGVTR-----CEARPACAVG 224
           C++ C   +PGC C +G  R     C  R  C  G
Sbjct: 63  CIKIC---APGCVCRLGYLRNKKKVCVPRSKCLPG 94


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 425 QDGNSFRKDSSTPSSR 378
           +DGNS+R D     SR
Sbjct: 240 EDGNSYRNDGERSCSR 255


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 329 SQF*FLHALLHIDISWM 279
           SQ+ FL+A+ H D  W+
Sbjct: 128 SQYEFLNAIHHYDDIWL 144


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 329 SQF*FLHALLHIDISWM 279
           SQ+ FL+A+ H D  W+
Sbjct: 128 SQYEFLNAIHHYDDIWL 144


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 329 SQF*FLHALLHIDISWM 279
           SQ+ FL+A+ H D  W+
Sbjct: 179 SQYEFLNAIHHYDDIWL 195


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 329 SQF*FLHALLHIDISWM 279
           SQ+ FL+A+ H D  W+
Sbjct: 128 SQYEFLNAIHHYDDIWL 144


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 178 GDHNPVFLQ 204
           GDH PVFL+
Sbjct: 375 GDHKPVFLE 383


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 313 CMRCCTSISPGCSCVVGVTR 254
           C++ C   +PGC C +G  R
Sbjct: 63  CIKIC---APGCVCRLGYLR 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,988
Number of Sequences: 438
Number of extensions: 2081
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)