Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333G01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual    88   6e-19
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    29   0.42 
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   1.3  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    27   2.2  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   9.0  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   9.0  

>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
 Frame = +2

Query: 74  VMANWPALGSIILPNVGGWANGLFFAGQIRKDSSEKSWYDELKKPSWTPPKWVFGPAWTV 253
           +  NW    + ++P   GW  G  +  + RKD      Y+  K+P + PP   FGPAWT+
Sbjct: 11  ISKNW--WSASLVPVACGWFIGNSY--KPRKD------YENKKQPKFHPPASAFGPAWTL 60

Query: 254 LYSSMGYASYLIWEECDGFTEDAVLPLT-LYGVQLLLNWSWTPIFFGLKDFKLAFIEISV 430
           LY +MGYAS+L ++       +A    + LY  QL  N++W P+F+GL   KLA  ++ +
Sbjct: 61  LYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMPLFYGLAKPKLALADLGI 120

Query: 431 LSGAAVATTLSFGSVNKTAGLLLVPYLAWL 520
           L+G       ++  +  TA   L+PYLAWL
Sbjct: 121 LTGLVGWLAKTWWPLAPTASKWLIPYLAWL 150


>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = -3

Query: 516 QAKYGTSSKP--AVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSC-- 349
           Q  Y + ++P  A L T P+  V  T    +T++S   ++K++    +G+ ++L+ SC  
Sbjct: 120 QNLYASPAEPGTAPLGTYPHPCVHLTV---NTDVSSPLAIKTYVSSPVGITERLADSCAF 176

Query: 348 --TPYNVR 331
             TP+ +R
Sbjct: 177 VPTPFTIR 184


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 375 VQDQLSSSCTPYNVRGRTASSVKPSHSSQMR 283
           +Q  LSS  T  NVR + A+ V+PS S   R
Sbjct: 369 IQSTLSSRTTTGNVRTKAANIVRPSSSINRR 399


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 278 SYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLK 397
           ++++ ++C+GF+  + L         L+++ W P+ +G K
Sbjct: 211 NFILGQDCNGFSLGSFLVRRSDWTSRLMDFLWDPVVYGQK 250


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 204 SQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMVLLKMQSYLSHCTEYSCYSTGLGLLF 383
           +Q+GL  SG + + GLF         T    NV  LL +   LSH   YS     +   F
Sbjct: 478 NQSGL--SGSVFRYGLFENYVDSCVTTDEAFNVCDLLSISDCLSHDFPYSYTGDEISTWF 535

Query: 384 S 386
           S
Sbjct: 536 S 536


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 313 SKTITFLPDEVRGISHAAVENSPSWTKYPLWGSPAWLL 200
           SK+   L + V  +S    E++P+  +  L G P W +
Sbjct: 595 SKSSNSLKESVEALSEIPFEDAPALDESDLSGDPFWAI 632


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 219 GVQLGFFNSSYQDFSLLSLRI*PAKNNPLAHPPTFGRII 103
           G  LG  N++Y+     SL I   +  P    PTFGR+I
Sbjct: 385 GELLGSQNTTYKPVYYHSLLIECCRIAPKILAPTFGRVI 423


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 477 LTLPNDSVVATAAPDSTEISMNASLK 400
           + +PNDS  A+  P  T  + NAS K
Sbjct: 347 IQMPNDSTQASLMPSYTRKTSNASKK 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,501
Number of Sequences: 5004
Number of extensions: 54379
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)