Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333G01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 42 4e-04
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 2.3
01_05_0721 + 24594815-24594834,24595207-24595313,24595417-245954... 28 4.0
04_04_1435 + 33585508-33586490,33586646-33586664 28 5.2
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734... 28 5.2
12_02_0775 - 23049842-23051299 27 6.9
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 27 6.9
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 6.9
01_05_0331 - 21057957-21058205,21059213-21059791 27 9.1
>05_01_0370 + 2909216-2909797
Length = 193
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +2
Query: 266 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 445
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 446 VATTLSFGSVNKTAGLLLVPYLAW 517
A FG VN AG L P +AW
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAW 180
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 182 SWYDELKKPSWTPPK 226
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>01_05_0721 +
24594815-24594834,24595207-24595313,24595417-24595472,
24595562-24595810,24595871-24596077,24596157-24596243,
24596331-24596426,24596500-24596715,24596908-24597090,
24597222-24597449
Length = 482
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 370 RPVE*QLYSVQCER*DCIFSKTITFLPDEVRGISHAAVENS 248
R +E + SV ER +FS T+ P+EVR ISH A++ +
Sbjct: 188 RDIERIIASVPKERQTLLFSATV---PEEVRQISHIAMKKN 225
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 27.9 bits (59), Expect = 5.2
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 76 NGKLACTWFNYPSKC 120
+G+L C WF YP +C
Sbjct: 244 DGELYCVWFRYPIRC 258
>01_02_0118 +
11271020-11271293,11272849-11273145,11273226-11273439,
11273563-11273672,11273746-11273945,11274439-11274501,
11274560-11274663,11274868-11275055,11275129-11275328,
11275463-11275693
Length = 626
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 LKDFVMANWPALGSIILPNVGGWANGLFFAGQIRKDSSEKSWYDELKKPSWT-PPKWV 232
++ FV W + G I NGL A Q K S S + +L+ SW+ PP V
Sbjct: 109 VRSFVNPVWTSSGRPITQGDSLNGNGLNTASQTEKQSDSDSSHKKLQGLSWSFPPSIV 166
>12_02_0775 - 23049842-23051299
Length = 485
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 159 SAKTAVKSPGMMS*RSQAGLPQSGYLVQLGLFSTAAWDMPLTSSGRNVMV 308
+A A+ PG + G+ G+ Q+ + AA LT GRN +V
Sbjct: 332 AAAAAILPPGFQERTASRGVVTMGWAPQIAILEHAAVGAFLTHCGRNSLV 381
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = -3
Query: 507 YGTSSKPAVLLTLPNDSVVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRG 328
YG+S P V +P D + S E S P ++ D PYN+R
Sbjct: 420 YGSSETPQVSSKVPKDRLRHRHREKSGEAVYGTSHPEPKPAEVKPADYSDPKYDPYNIRS 479
Query: 327 R 325
+
Sbjct: 480 K 480
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 424 DLNECQLEVLQSEENRSPRPVE 359
++ E QL+ L+SEE +SP P+E
Sbjct: 662 NIAELQLQGLESEEIKSPEPIE 683
>01_05_0331 - 21057957-21058205,21059213-21059791
Length = 275
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 176 EKSWYDELKKPSWTPPKWVFGP 241
E W D + PS PP +FGP
Sbjct: 158 ESDWMDTVIDPSHVPPSILFGP 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,476
Number of Sequences: 37544
Number of extensions: 366314
Number of successful extensions: 1009
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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