Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     112   2e-27
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          92   3e-21
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.36 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.4  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  112 bits (270), Expect = 2e-27
 Identities = 50/87 (57%), Positives = 67/87 (77%)
 Frame = +1

Query: 19  DLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMY 198
           D VDVTLA +GR L+AH++VLS CSPYF+E+ K  P +HP++ L+DV+ S L  L++F+Y
Sbjct: 30  DFVDVTLACDGRSLKAHRVVLSACSPYFRELLKSTPCKHPVIVLQDVAFSDLHALVEFIY 89

Query: 199 QGEVNVKQEELASFISTAEQLQVKGLT 279
            GEVNV Q  L+SF+ TAE L+V GLT
Sbjct: 90  HGEVNVHQRSLSSFLKTAEVLRVSGLT 116


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 92.3 bits (219), Expect = 3e-21
 Identities = 44/92 (47%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
 Frame = +1

Query: 4   LLSRGDLVDVTLAAEGRLLQAHKLVLSVCSPYFQEMFKMNPTQHP-IVFLKDVSHSALRD 180
           LL     VDVTLA     L+AHK+VLS CS YFQ++   NP +HP I+  +DV  + L+ 
Sbjct: 29  LLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKF 88

Query: 181 LLQFMYQGEVNVKQEELASFISTAEQLQVKGL 276
           +++F+Y+GE++V Q EL S + TA+QL++KGL
Sbjct: 89  IIEFVYRGEIDVSQAELQSLLKTADQLKIKGL 120


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 181 LLQFMYQGEVNVKQEELASFIS-TAEQLQVKGLTGNQNEE 297
           ++  +Y G VNV+ E + S++    ++  V    GN NE+
Sbjct: 43  IIDEVYNGNVNVEDENVQSYVECMMKKFNVVDENGNFNEK 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 299 LSSF*LPVKPLT*SCSAVLINDANSSCLTLTSP 201
           LSS      P+T + S ++ N  NS+C    SP
Sbjct: 323 LSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/11 (72%), Positives = 9/11 (81%), Gaps = 1/11 (9%)
 Frame = -1

Query: 362 CLCCDDL-GPG 333
           C CCD+L GPG
Sbjct: 13  CWCCDNLGGPG 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.130    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,799
Number of Sequences: 438
Number of extensions: 1969
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)