Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    27   1.3  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   9.0  

>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -3

Query: 288 RNTRYLT-DAYSSEQKHSDRRSTEQYHSLGGRSS*WNGIRDRNL*LNDFFFVALVGRRAY 112
           RN R +  +   + ++ S+ R   Q  + G + S +   R   L L DF  + ++G+ A+
Sbjct: 45  RNQRRINLEQRLATERGSEERKNRQLRASGEKESQFLRFRRTRLSLEDFSTIKVIGKGAF 104

Query: 111 G 109
           G
Sbjct: 105 G 105


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 48  WLCPWHC*SPWATVSTHHQVGRMLVCLQGQQKKNHLIINFDHGF 179
           WL P H  + + T++TH +V  +   L  QQ +    IN   GF
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQAR----INVQQGF 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,161
Number of Sequences: 5004
Number of extensions: 35881
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)