Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          23   1.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 134 ATKKKSFNYKFRSRIPFHHEDLPP 205
           A ++K F    R  + FHH+D  P
Sbjct: 105 AIEEKRFELTNRKGVVFHHDDARP 128


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 108 PPDGEWIPSPMDFSNARG 55
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 205 RWKIFMMEWNP 173
           RW  + ++WNP
Sbjct: 89  RWNDYKLKWNP 99


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 132 LVGRRAYGPPDGEWIP 85
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,859
Number of Sequences: 438
Number of extensions: 2596
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)