Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   3.9  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   6.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    25   9.0  

>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 276 SVYFQLFSQTKLLFDTVKRRQRLHE 202
           S+YF ++ + K+LF   K+   LHE
Sbjct: 86  SIYFVVYEKCKVLFGVNKKYTSLHE 110


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 125 FFLPRPREVLRLPG 84
           FFLP PR+  RLPG
Sbjct: 69  FFLPSPRKRRRLPG 82


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 228 VKRRQRLHEFITFLFFKNGNQL 163
           VK++  L EF   + FKN NQL
Sbjct: 233 VKKKVTLREFFQKIGFKNDNQL 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,370
Number of Sequences: 5004
Number of extensions: 31862
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)