Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333F04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 267 8e-73
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 123 2e-29
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 118 7e-28
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 68 7e-13
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.73
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.7
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 27 2.2
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 3.0
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 3.9
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 25 5.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 9.0
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 25 9.0
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 9.0
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 267 bits (654), Expect = 8e-73
Identities = 118/155 (76%), Positives = 141/155 (90%)
Frame = +1
Query: 1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM 180
APL + GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+
Sbjct: 271 APLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQI 330
Query: 181 LNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFR 360
++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQE+F+R+ +QF+AMFR
Sbjct: 331 RSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFR 390
Query: 361 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYKQY 465
RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY+QY
Sbjct: 391 RKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 123 bits (296), Expect = 2e-29
Identities = 55/162 (33%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Frame = +1
Query: 1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM 180
AP+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V +
Sbjct: 273 APIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAV 332
Query: 181 LNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATFIGNSTAIQELFKRIS 336
I+ K + FV+W P K +CD PP+ ++ A + N+T+I E + R+
Sbjct: 333 TTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLD 392
Query: 337 EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYKQ 462
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 393 HKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 118 bits (283), Expect = 7e-28
Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 8/162 (4%)
Frame = +1
Query: 1 APLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQM 180
+P+ S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V +
Sbjct: 277 SPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAV 336
Query: 181 LNIQNKNSSYFVEWIPNNVKTAVCDIPPR--------GLKMAATFIGNSTAIQELFKRIS 336
+I+++ + FV+W P K +C PP+ + A + N+T+I E + R+
Sbjct: 337 TSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLD 396
Query: 337 EQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYKQ 462
+F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 397 HKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 68.1 bits (159), Expect = 7e-13
Identities = 40/162 (24%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Frame = +1
Query: 4 PLTSRGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVD 171
P T++ ++ +A+ TV ++ +++ KN M + +P + ++++ I +G +V
Sbjct: 275 PFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVH 334
Query: 172 EQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQELFKRISEQ 342
+ +L I+ + + F+ W P +++ A+ P +++ + N T+I LFKR +Q
Sbjct: 335 KSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASLFKRTLDQ 394
Query: 343 FTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYK 459
+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 395 YDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 298 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 405
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 136 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 309
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 310 IQELFK 327
+EL++
Sbjct: 403 KEELYE 408
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 489 RPRRRWPPVLFVL-GDKVVHVALSLGELHLVHALAGVPMQESLAPEHSGELFRDALE 322
RP R P +LF+L + + A S LH+ + + + + EH ELF +E
Sbjct: 106 RPYRLAPKLLFLLLSQTLFNYANSKDPLHIWYKARLDFLHQQMLKEHVSELFNQIME 162
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 221 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 123
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +1
Query: 115 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 240
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +1
Query: 115 RYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPN 231
+Y+ ++F G + NI N S EW+PN
Sbjct: 29 QYIPTISVFEGSLIDNRDTLSYFNISNLEPSERSEWLPN 67
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 292 IGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 453
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 175 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 297
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 182 LTSRTRTPHTSWNGSPTT*R 241
L S TP+ S+NG+PT+ R
Sbjct: 476 LNSGNPTPYNSYNGTPTSSR 495
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 263 GGMSHTAVFTLLGIHSTKYEEFLFWMLSICSSTSFMDMRPRKMA 132
GG S + LLG + T F WM +S + M+P+ +A
Sbjct: 370 GGFSDAEIIVLLGENGTGKTTFCKWMAK--NSDLKISMKPQTIA 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,714
Number of Sequences: 5004
Number of extensions: 27256
Number of successful extensions: 114
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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