Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.4  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   7.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 192 EQELLILRGMDPQQREDRRVRHSSSWSQDGRHLHRKLHRH 311
           +Q  L L+    Q  +D    H+S+  + G     K H+H
Sbjct: 93  QQHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQH 132


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 425 SASVNSISSMPSPVYQCKKALR-LNIAVN 342
           +AS NS+ S+P  ++   + LR +++A N
Sbjct: 267 NASYNSLDSLPEGLFASTRDLREIHLAYN 295


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 223 SIPRSMRSSCSGC 185
           ++P+S++  C GC
Sbjct: 11  TMPKSLKEPCDGC 23


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 417 GELHLVHALAGVPMQESLAPEHSG 346
           G++HL  A+     Q+   P H G
Sbjct: 910 GQIHLTVAVVQYKTQDGFGPIHYG 933


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,011
Number of Sequences: 438
Number of extensions: 1925
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)