Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F01f
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   1.9  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    24   5.9  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    24   5.9  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    24   5.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 55  KNKIRD-LFSNSSSCCRGSNIFILETEKPT 141
           + KI D LFS  SSCC   +I I E   P+
Sbjct: 441 EEKISDVLFSKISSCCFAHDIEISENSTPS 470


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 328 VPVQLAFFFRDLSPI--HSQILKHXSHSIAFVIHWXPGLSVRPNFXFISGNFDIY 170
           + +Q + F ++L  +   S+ ++    S+ FV+H+   L        I GN+D++
Sbjct: 122 IDIQFSAFIKNLCQLVKDSEDVQSVEISLRFVLHFVSFLYNSSFISHIYGNYDVF 176


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 165 EKASTASRSRLFRFQNKYVT 106
           EK   A+ ++LFR+ NKY +
Sbjct: 451 EKQREANENKLFRYVNKYTS 470


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   VLWFCLLYCILFIYHAIKNKIRDLFSNSSS 93
           VLW+  L  ++ +   IKNK R +F+ S++
Sbjct: 420 VLWYSKLRKLIEMMDNIKNKDRSIFNLSTN 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,322,267
Number of Sequences: 5004
Number of extensions: 22122
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)