Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F01f
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0702 - 22278513-22278751,22279054-22279889,22279932-222799...    27   5.3  
12_01_1013 - 10304368-10304403,10304610-10305131                       26   9.3  
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435...    26   9.3  

>12_02_0702 -
           22278513-22278751,22279054-22279889,22279932-22279975,
           22280350-22280463
          Length = 410

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 4   VLWFCLLYCILFIYHAIKNKIRDLFSNSSSCCRGS 108
           + W    YC    Y   K K+R LF+N + C   S
Sbjct: 369 IQWLNFPYCT---YDGFKRKLRGLFTNGALCIHSS 400


>12_01_1013 - 10304368-10304403,10304610-10305131
          Length = 185

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 337 MIIVPVQLAFFFRDLSPIHSQILKH 263
           +++ PV L  + RDL+PIH+ ++ H
Sbjct: 151 LVVCPVILVLY-RDLNPIHAVLIIH 174


>10_08_0985 -
           22042801-22042963,22043019-22043138,22043261-22043562,
           22044055-22044351,22044448-22044556,22044826-22045358,
           22045446-22045644,22045741-22045865,22045937-22046020,
           22046093-22046221,22046337-22046465,22046593-22046739,
           22047106-22047346,22047859-22047980
          Length = 899

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 52  IKNKIRDLFSNSSSCCRGSNIFILETEKPTSRRC 153
           I+ +I   FSN SSC  G  + + E +   SRRC
Sbjct: 702 IEEEIIRRFSNPSSCRLGIFLCLGEFQVQASRRC 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,143,975
Number of Sequences: 37544
Number of extensions: 131043
Number of successful extensions: 279
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)