Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333F01f
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 337 MIIVPVQLAFFFRDLSP--IHSQILKHXSHSIAFVIHWXPGLSVRPN 203
           +II+PV ++FF  DLS   I    L      I  V+++  G+  + N
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQDN 149


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 337 MIIVPVQLAFFFRDLSP--IHSQILKHXSHSIAFVIHWXPGLSVRPN 203
           +II+PV ++FF  DLS   I    L      I  V+++  G+  + N
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQDN 149


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 337 MIIVPVQLAFFFRDLSP--IHSQILKHXSHSIAFVIHWXPGLSVRPN 203
           +II+PV ++FF  DLS   I    L      I  V+++  G+  + N
Sbjct: 103 LIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVVNFRTGIMQQDN 149


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 142 SRRC*CFFVYKYQNCH 189
           +RRC C ++YK    H
Sbjct: 323 ARRCLCEYLYKQLELH 338


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  LYSIYLSCNQKQDTRFI 77
           +YS+Y +   + DT+FI
Sbjct: 141 IYSLYTAVITRPDTKFI 157


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 27  LYSIYLSCNQKQDTRFI 77
           +YS+Y +   + DT+FI
Sbjct: 141 IYSLYTAVITRPDTKFI 157


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +2

Query: 218 KAGXPMNYEGDAVTTML*DLTVNGGQITEKESQLHW 325
           KAG PMN E   + T    L       T+++    W
Sbjct: 127 KAGCPMNLENFPMDTQRCPLQFGSFGYTKRDVIYKW 162


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/26 (23%), Positives = 15/26 (57%)
 Frame = +2

Query: 119 FWKRKSRLLDAVDAFSYINIKIATNE 196
           +W+  S ++     +SY++ K+  N+
Sbjct: 282 YWRTPSVVVSDYSDYSYLDEKLERND 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,654
Number of Sequences: 438
Number of extensions: 1540
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)