Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333E12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 329 2e-91
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 197 7e-52
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 189 2e-49
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 1e-22
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 92 4e-20
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 73 3e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 38 1e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 5e-04
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.14
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.14
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.73
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 0.97
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 1.7
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 3.9
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 5.2
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 9.0
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 9.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.0
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 25 9.0
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 9.0
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 9.0
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 329 bits (808), Expect = 2e-91
Identities = 156/173 (90%), Positives = 163/173 (94%)
Frame = +1
Query: 1 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 180
AVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERG
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERG 197
Query: 181 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRC 360
Y+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR
Sbjct: 198 YTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRA 257
Query: 361 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 519
PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIA
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIA 310
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 197 bits (481), Expect = 7e-52
Identities = 90/172 (52%), Positives = 124/172 (72%)
Frame = +1
Query: 1 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG 180
AVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +G
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKG 197
Query: 181 YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRC 360
Y+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ C
Sbjct: 198 YAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYEC 257
Query: 361 PEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 516
PE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY G+
Sbjct: 258 PECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGL 309
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 189 bits (461), Expect = 2e-49
Identities = 86/170 (50%), Positives = 119/170 (70%)
Frame = +1
Query: 4 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 183
VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGH 203
Query: 184 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 363
++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F P
Sbjct: 204 ELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAP 263
Query: 364 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 513
E LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+ G
Sbjct: 264 EVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRG 313
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 100 bits (240), Expect = 1e-22
Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Frame = +1
Query: 34 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 207
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 208 EIVRDIKEKLCYVALDFEQEMA--TAASSSSLEKSYELPDGQ--VITIGNERFRCPEALF 375
IKE+ CYV D +E + L+ + E G I +G ERF PE F
Sbjct: 240 -----IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFF 294
Query: 376 QPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 507
P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 295 NPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 92.3 bits (219), Expect = 4e-20
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 20/178 (11%)
Frame = +1
Query: 40 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 219
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 220 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 339
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 340 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 513
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPG 334
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.9 bits (171), Expect = 3e-14
Identities = 43/121 (35%), Positives = 64/121 (52%), Gaps = 9/121 (7%)
Frame = +1
Query: 184 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 363
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 364 EALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 516
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 517 A 519
+
Sbjct: 360 S 360
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 37.5 bits (83), Expect(2) = 1e-07
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 406 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 519
GI + N I +CDVDIR L N ++ GGT++ G +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFS 363
Score = 33.1 bits (72), Expect(2) = 1e-07
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 277 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 381
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 16 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 183
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.2 bits (97), Expect = 2e-05
Identities = 23/91 (25%), Positives = 42/91 (46%)
Frame = +1
Query: 31 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 210
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224
Query: 211 IVRDIKEKLCYVALDFEQEMATAASSSSLEK 303
+ C+V+ D+ ++A A LE+
Sbjct: 225 QAELLMHDHCHVSSDYTHDIAHALDRDILER 255
Score = 41.9 bits (94), Expect = 6e-05
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +1
Query: 346 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 516
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGM 650
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 38.7 bits (86), Expect = 5e-04
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +1
Query: 4 VLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 183
++ LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLP 244
Query: 184 SFTTTAEREIVRDIKE 231
+ ++ + DI E
Sbjct: 245 TLKSSGQYVSKEDITE 260
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +2
Query: 212 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 382
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 16 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 189
+ +G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 2 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 106
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 248 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 394
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 233 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 388
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 2 PCSRCTRPVVPPVSCWTPATVSPTPCPST 88
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 23 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 115
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 272 PPLHPAA-PSRSLTNFPTVRSSPSET 346
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 281 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 385
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 345 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 220
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = -3
Query: 132 GQVQTQDGVGECVSLVDGHGVGDTVAGVQHDTGGTTGR 19
GQ + G G G G GDTV GG GR
Sbjct: 122 GQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +2
Query: 212 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 391
S V+S S TSLSTS + PA S + +V S +++ S + ++ +
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTG-SETSSVVGSGTDSATSSSWTAETSSSAI 937
Query: 392 VWKLAASTRPHITPS*SATWTS 457
+AAS P + S +++W+S
Sbjct: 938 TSSVAASVTPTSSSS-ASSWSS 958
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 6.8
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +2
Query: 212 SFVTSRRSCA--TSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPR 385
S VTS S +SLS+S A+ S SLTN + S+PS T + +S
Sbjct: 497 SLVTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTS 556
Query: 386 SWVWKLAASTRPHITPS*SATWTS 457
S L S+ P I+ S +AT TS
Sbjct: 557 S---SLIISS-PIISSSLTATSTS 576
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.8
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = +2
Query: 221 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 400
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 401 LAASTRPHITPS*SATWTS 457
S+ + S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 272 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 436
PP+ +PS SL P S + + S R ++ +S + K + P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 227 RRSCATSLSTSSRRWPPLHPAAPSRS-LTNFPTVRSSPSETKDSVAQRLSSNPRS 388
R++ A + + +S+ + P++P S L+ FP++ + SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 14 CTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVWT 127
C + PV + T S TP P+T + +PTP+ T
Sbjct: 833 CDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST 869
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 17 TRPVVPPVSCWTPATVSPTPCPSTRDT 97
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 230 RSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPS 340
RS ++ STS+R + +P S N V S+PS
Sbjct: 45 RSATSNFSTSAR-FAARYPTTAGESFQNLTPVNSNPS 80
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 360 PRGSLPTLVLGYGSLRHP 413
P G++PTL+LG G + HP
Sbjct: 568 PLGNVPTLILG-GDVYHP 584
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 52 SGDGVSHTVPIYEGYALP 105
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 223 IKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQV 330
IKEKL VA EQE + SSL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,035
Number of Sequences: 5004
Number of extensions: 48283
Number of successful extensions: 229
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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