Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333E10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   5.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   9.0  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 167 LLYAYITSCIFYEESITSGTKTF 99
           LLYA I++CIF  ++I  G+K F
Sbjct: 152 LLYALISTCIFVSQNI-FGSKIF 173


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 436 DYRPETLATFVYSQAT--VLLLLRQKKTEKVISFQ 338
           DYRP  L  F+Y Q    + +L+ +K   K  +F+
Sbjct: 296 DYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFK 330


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 376 LRQKKTEKVIS--FQLNK*AVKMTSANVFIGRDDVHCTSN 263
           +R+  TE+ +   + LN+  +     N+  G DDVH  +N
Sbjct: 64  IRKNSTEEALQTIWNLNRMLIPNVYLNINWGNDDVHSLTN 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,037
Number of Sequences: 5004
Number of extensions: 40425
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)