Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   3.0  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   5.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   9.0  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 354 SSDGRIYNNV*IYLN*KQ*SLYGLTIN 274
           S+DGR+Y N+ +  N    SL+GL ++
Sbjct: 207 STDGRVYANIGVSSNTNTKSLFGLCVH 233


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 485 QLYFFFTFWGLLLARRPFQFKTDYRI 408
           +L   F FW  L+  + FQ K D+R+
Sbjct: 477 RLIVTFRFWYYLMKAKSFQHKRDHRL 502


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 288 GLTINIIIYVLQSSIFNFANIRCRVS*LYFKNLPEVY 178
           G+ I   IY+L+  +  F + R     ++FKN   +Y
Sbjct: 52  GVQILYAIYLLEKELARFKSARLNFCIVFFKNWEALY 88


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 6   AKYSLHRSDFLRLKLHGQNNS 68
           ++Y L  SDFL   +H  NNS
Sbjct: 381 SEYDLDASDFLSSSVHKNNNS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,029
Number of Sequences: 5004
Number of extensions: 45130
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)