Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D09f
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.88 
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   3.5  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    24   8.2  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    24   8.2  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 305 HLDLFILRYIFGWIFXLF 358
           HL LF+L Y+ GW F  F
Sbjct: 22  HLVLFVLSYVLGWPFTNF 39


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 192 KFITMDFHLKTTLLVEALRFIFLEINTRTVGNRKLDDVPARSQAAG 55
           K+I   F L   LLV A  + F +I  R+V    L+     +   G
Sbjct: 5   KYIIFSFALAPLLLVNANTYNFTQIQKRSVNQAVLESSQDTNSVGG 50


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 69  YEQERHQVYDFPLSWYLSLE 128
           ++ E+ + +DFP+  +LSLE
Sbjct: 276 FDAEQEEKHDFPIDPFLSLE 295


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 195 TKFITMDFHLKTTLLVEALRFIFLEINTRTVGNRK 91
           T+F  +DF LKTT LV  L  IFL  + + + N +
Sbjct: 314 TQFPNLDFILKTTALV--LFIIFLVPSFKKLQNEE 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,278
Number of Sequences: 5004
Number of extensions: 20553
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)