Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D09f
         (359 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060409-1|AAL25448.1|  217|Drosophila melanogaster LD34429p pro...    31   0.58 
AF245387-1|AAF63381.1|  217|Drosophila melanogaster Keren protein.     31   0.58 
AE014296-2944|AAF49315.1|  217|Drosophila melanogaster CG32179-P...    31   0.58 

>AY060409-1|AAL25448.1|  217|Drosophila melanogaster LD34429p
           protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 67  TTSRNVIKFTISHCPGIYL*KYKP*CLN*KGCFQMKVHCNEFSFS 201
           TT R  + F I  CP  Y+  Y   CLN   CF +K+H NE  ++
Sbjct: 49  TTPRPNVTFPIFACPPTYVAWY---CLNDGTCFTVKIH-NEILYN 89


>AF245387-1|AAF63381.1|  217|Drosophila melanogaster Keren protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 67  TTSRNVIKFTISHCPGIYL*KYKP*CLN*KGCFQMKVHCNEFSFS 201
           TT R  + F I  CP  Y+  Y   CLN   CF +K+H NE  ++
Sbjct: 49  TTPRPNVTFPIFACPPTYVAWY---CLNDGTCFTVKIH-NEILYN 89


>AE014296-2944|AAF49315.1|  217|Drosophila melanogaster CG32179-PA
           protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +1

Query: 67  TTSRNVIKFTISHCPGIYL*KYKP*CLN*KGCFQMKVHCNEFSFS 201
           TT R  + F I  CP  Y+  Y   CLN   CF +K+H NE  ++
Sbjct: 49  TTPRPNVTFPIFACPPTYVAWY---CLNDGTCFTVKIH-NEILYN 89


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,753,034
Number of Sequences: 53049
Number of extensions: 198562
Number of successful extensions: 345
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)