Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D09f
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional gl...    27   3.9  
AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacti...    27   3.9  
AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacti...    27   3.9  
Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    26   6.9  

>U23159-1|AAA85857.1| 1005|Caenorhabditis elegans bifunctional
           glyoxylate cycle proteinprotein.
          Length = 1005

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   IKLYKEEEEFVNYCHPSTRQLDYEQERHQVYDF-PLSWYL 119
           I LY      ++Y HP+T++     E+H V    P  W+L
Sbjct: 608 INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVRPRGWHL 647


>AF026209-2|AAN84883.1|  863|Caenorhabditis elegans Gex interacting
           protein protein7, isoform b protein.
          Length = 863

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   IKLYKEEEEFVNYCHPSTRQLDYEQERHQVYDF-PLSWYL 119
           I LY      ++Y HP+T++     E+H V    P  W+L
Sbjct: 568 INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVRPRGWHL 607


>AF026209-1|AAB71278.2|  968|Caenorhabditis elegans Gex interacting
           protein protein7, isoform a protein.
          Length = 968

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 3   IKLYKEEEEFVNYCHPSTRQLDYEQERHQVYDF-PLSWYL 119
           I LY      ++Y HP+T++     E+H V    P  W+L
Sbjct: 568 INLYDAVRNNISYTHPTTKKEYTLNEKHAVLKVRPRGWHL 607


>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 84  HQVYDFPLSWYLSLEI*TLMPQL 152
           H++YDFPL W+  LE  TL+  L
Sbjct: 3   HELYDFPL-WFFVLEGITLLALL 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,708,145
Number of Sequences: 27780
Number of extensions: 112208
Number of successful extensions: 255
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)