Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D08f
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   150   9e-38
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   147   6e-37
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    27   1.4  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    26   1.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   1.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   4.3  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   5.6  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   5.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    24   7.4  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    24   7.4  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    24   9.8  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  150 bits (363), Expect = 9e-38
 Identities = 69/120 (57%), Positives = 91/120 (75%)
 Frame = +1

Query: 37  KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
           ++VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D
Sbjct: 19  RVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KD 76

Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
            E SFRK +L  E +QG++ L +F+G D+T+DKLR + +KWQ+ IEA   +KTTDGY+ R
Sbjct: 77  EEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCR 136


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  147 bits (356), Expect = 6e-37
 Identities = 67/120 (55%), Positives = 91/120 (75%)
 Frame = +1

Query: 37  KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
           ++VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D
Sbjct: 19  RVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KD 76

Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
            E +FRK +L  E +QG++ L +F+G+ +T+DKLR + +KWQT IEA   +KTTDGY+ R
Sbjct: 77  EEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCR 136


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 118 TLVNRTQG-TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 294
           T VN+    TK+A    KG   +V++  L+   DAE + + F  I EY++  N       
Sbjct: 82  TSVNKANMLTKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFP 137

Query: 295 MDLTTDKLRWMXKKWQTLIE 354
            D T  K      +W ++ E
Sbjct: 138 KDKTQGK---FINEWDSIFE 154


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 327 HPPELIGCEVHAVEVAEHITS 265
           H PEL+ C     +VA+H+TS
Sbjct: 186 HSPELVQCITCLPDVADHLTS 206


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 177 NSSLQSF-RSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLILTPFLPPFDRP 1
           N+ L S+ RSN RS      R A     +  RS    P+     V+N +LTP  PP + P
Sbjct: 193 NNVLPSYVRSNSRSSARSTARSAPRS-TQRSRSSSANPVTTPP-VNNTLLTPPAPPVELP 250


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -2

Query: 321 PELIGCEVHAVEVAEHITSL 262
           PELI C  H  EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -3

Query: 317 SLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETS 180
           +LS++ S   KLQ  +R  + +A+NL    D+ A+ +  +S    S
Sbjct: 446 ALSLLLSQDEKLQHDVRSASSAALNLPRDTDIKATPNLSQSGNINS 491


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 159 FRSNFRSLGTVDKRGADLPLAEH 91
           F  + RSL +VD     LPL EH
Sbjct: 44  FSRSHRSLSSVDVSSPSLPLREH 66


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +1

Query: 256 YVQGRNVLCNFHGMDLTTDKLRWMXKK 336
           Y    + +CN+ G +  TD L W  ++
Sbjct: 916 YAGDADYICNYMGNEAWTDALEWAGQR 942


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 145 KIASEGLKGRVFEVS----LADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 303
           K+ S+ L G   EV+     +DL+++ D +   +    I++   G + LCN    D+
Sbjct: 216 KLHSQSLVGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMFNGDDELCNIRLYDI 272


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = -2

Query: 327 HPPELIGCEVHAVEVAEHITSLHIFGD*--SEFAERPFRVSVSL*ISQGNFENSSLQSFR 154
           +P   +G      E+ EH     I  D    +  + PF+ +V   +   NF+     +  
Sbjct: 543 NPNHRLGAVADTTELKEHPFFADINWDLLSKKKVQPPFKPNVQNDLDVSNFDKEFTNTNV 602

Query: 153 SNFRSLGTVDKRGADLPLA 97
            N   +  VD   A  PL+
Sbjct: 603 KNINIVSNVDPANASTPLS 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,095
Number of Sequences: 5004
Number of extensions: 33032
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)