Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333D08f
(397 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 180 4e-46
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 179 9e-46
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 178 2e-45
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 3.1
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 3.1
10_01_0304 - 3356541-3357518 27 5.5
06_03_0290 - 19193707-19193752,19193822-19194090 27 5.5
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 27 5.5
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 27 7.2
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845... 26 9.6
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264... 26 9.6
04_01_0473 + 6175882-6176125,6176458-6176539,6176798-6176907,617... 26 9.6
04_01_0049 - 532308-532961 26 9.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 180 bits (438), Expect = 4e-46
Identities = 87/120 (72%), Positives = 100/120 (83%)
Frame = +1
Query: 37 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
K VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 19 KTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
+++RK RL AE VQG+NVL NF GM TTDKLR + KKWQTLIEA +DVKTTDGY+LR
Sbjct: 79 --QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLR 136
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 179 bits (435), Expect = 9e-46
Identities = 87/120 (72%), Positives = 100/120 (83%)
Frame = +1
Query: 37 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
K VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 19 KTVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
+++RK RL AE VQGRNVL NF GM TTDKLR + KKWQTLIEA +DVKTTD Y+LR
Sbjct: 79 --QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLR 136
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 178 bits (433), Expect = 2e-45
Identities = 87/120 (72%), Positives = 99/120 (82%)
Frame = +1
Query: 37 KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
K VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 19 KTVDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
+++RK RL AE VQG+NVL NF GM TTDKLR + KKWQTLIEA +DVKTTD Y+LR
Sbjct: 79 --QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLR 136
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 320 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 177
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 186 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 94
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
>10_01_0304 - 3356541-3357518
Length = 325
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = -1
Query: 346 ESAIFXPST*AYRL*GPCRGSCRAHYVLAHIRRLI*ICGKTFPRQCQLVDQPGKLRKLFP 167
E F P+ A RL C+ +CR H + I+ ++ KT L G LR FP
Sbjct: 79 EGGRFAPNFDALRLEAACQHACRGHPNIVQIKDVV-ADAKTGDLFLVLEFVGGSLRDEFP 137
Query: 166 SILPK 152
P+
Sbjct: 138 RARPE 142
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 278 SATSTAWTSQPISSGGWXKNGRLSSKPTLM 367
+A S A T P S GW G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 115 TTLVNRTQGTKIASEGLKGRVFEV 186
TT+VN + K+A EG+KG ++V
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQV 40
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 120 RGADLPLAEHRRSLDIVPIFASEWVDNLILTPFLPPF 10
+G ++ + SL I P + W+D L TP + PF
Sbjct: 429 KGKNIDVFAENSSLAINPHYIQSWLDLLSRTPRVAPF 465
>10_06_0143 -
11183574-11183761,11183989-11184344,11184437-11184592,
11184825-11184994,11185906-11186064,11186856-11187164,
11187281-11187576,11187825-11188174,11188279-11188434,
11188634-11188803,11189289-11189447,11190702-11191010,
11191172-11191458,11191911-11192263,11192366-11192521,
11192680-11192849,11195800-11195958,11196937-11197254,
11197658-11197786
Length = 1449
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 253 EYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLI 351
E +QG LCN +GM T+ LR + W T I
Sbjct: 180 EKLQGEYQLCNGYGMKKATEVLR---EHWSTYI 209
>04_04_0479 -
25524753-25525426,25525736-25525819,25526255-25526483,
25526910-25527357,25528462-25528569,25528681-25528806,
25528887-25528981,25529062-25529147,25529253-25529408,
25529523-25529766
Length = 749
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 347 RVCHFLXIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLS 219
+VC H L+ ++PW TL C AI R LS
Sbjct: 669 QVCRAYKQHFGLAFTAAVPWLCNITLVACRDRAIASGARLGLS 711
>04_01_0473 +
6175882-6176125,6176458-6176539,6176798-6176907,
6177234-6177388,6177473-6178212,6178298-6178549,
6178960-6178993,6179071-6179253,6179533-6179637
Length = 634
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 186 NFENSSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLD 76
+F+N + NF+ G DLP EHR S D
Sbjct: 514 HFQNKRVVMAAYNFKVNGRYRTNTEDLPRLEHRTSFD 550
>04_01_0049 - 532308-532961
Length = 217
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 244 LIAEYVQGRNVLCNFHG-MDLTTDKLRWMXKKWQTLIEA 357
L+ E V GR VLC F G L D + W + +L++A
Sbjct: 73 LLLEIVTGRRVLCKFQGTFQLLVDWV-WRLHREGSLLDA 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,386,088
Number of Sequences: 37544
Number of extensions: 227188
Number of successful extensions: 631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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