Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D08f
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   175   7e-45
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       31   0.40 
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  175 bits (427), Expect = 7e-45
 Identities = 85/120 (70%), Positives = 97/120 (80%)
 Frame = +1

Query: 37  KIVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 216
           K VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    +
Sbjct: 18  KAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NN 74

Query: 217 AERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMXKKWQTLIEAXIDVKTTDGYVLR 396
           +E  FRKF+LIAE VQG+NVL NFH M +T DKL  + KKW TLIEA   VKTTDGY LR
Sbjct: 75  SEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLR 134


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 347  RVCHFLXIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 171
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 170  PFNPSEAI 147
              N SE++
Sbjct: 1182 VLNSSESL 1189


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -3

Query: 347  RVCHFLXIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 171
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 170  PFNPSEAI 147
              N SE++
Sbjct: 1182 VLNSSESL 1189


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 124 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIA-EYVQGRNVLCNFHGMD 300
           + RT+ +KI S GL  ++ E S  ++    +A R +R F   A EY+ G N++    G  
Sbjct: 144 LKRTKESKIGS-GLPRKLEEDS--NISEFHNAHRFYRSFLEAAVEYLYGYNIMWEIDGGG 200

Query: 301 LTTDKLRW 324
              D++ W
Sbjct: 201 RLEDEINW 208


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +1

Query: 163 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 273
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -3

Query: 356 ASMRVCHFLXIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARET 183
           AS++    L + L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  +
Sbjct: 133 ASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSSS 191

Query: 182 SKTLPFNPSEA 150
           S   PF PSE+
Sbjct: 192 SAFHPFRPSES 202


>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 278 STLRPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPSEAIFVP 138
           + L    Y +IN + +  LS+  S+   A   S ++PF PS  +F+P
Sbjct: 37  NALNSLLYGSINTSPQPLLSSPTSS--DASSCSPSMPFTPSIPMFMP 81


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 386 YPSVVFTSMXASMRVCHFLXIHLSLSVVRSMPWKLQST 273
           YP + + +    + V  FL I+  +  +  +PW L ST
Sbjct: 85  YPFLWYATASYPLHVAVFLSINSIIETIIDLPWDLYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,457,272
Number of Sequences: 27780
Number of extensions: 189917
Number of successful extensions: 480
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)