Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.10 
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.42 
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.42 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   5.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    25   6.8  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    25   6.8  
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.0  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 31.1 bits (67), Expect = 0.10
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +1

Query: 91  KNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*I 270
           K +D  ++ +E   T       + +    T +DSR R+        + RKR H       
Sbjct: 144 KLKDRTEASKEESKTVTDHSNRRESRRESTYYDSRERNGKRTSRSTLDRKRFHDA----- 198

Query: 271 QETEKRRFGRRIQHHS 318
            +TE+ R+GR    HS
Sbjct: 199 SDTERNRYGRSPSPHS 214


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 381 NLFGVLETKLHIPRCARSRFNGMVLNSSS 295
           N+FG LE    I    RS+ NGM++N SS
Sbjct: 73  NVFGALEVIKAITPIFRSQHNGMIINVSS 101


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -3

Query: 381 NLFGVLETKLHIPRCARSRFNGMVLNSSS 295
           N+FG LE    I    RS+ NGM++N SS
Sbjct: 73  NVFGALEVIKAITPIFRSQHNGMIINVSS 101


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 248 IVLIIYKYRKRKNDDLEDEFNTIPLKRERA 337
           + L+   ++KRK++++    N  PLK +RA
Sbjct: 200 VSLVKNSFKKRKHENINRGTNARPLKEDRA 229


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 43  FWFEIRTSEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHD 189
           FW      E E+ ++ KN     +R   +       RNKT  PPRT  D
Sbjct: 465 FWISFLRFELEQPLNSKNYTEHHARVSNVM---EMIRNKTRLPPRTIMD 510


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 147 PMPSREESFPTALTTVSVFPRHVSLKLRRSYFEPERYNV 31
           P+P      PTA++++  F ++ S   R++   PE  ++
Sbjct: 810 PLPPPAPPLPTAMSSLQKFEKNDSQIFRKTIIIPENISI 848


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 272 RKRKNDDLEDEFNTIPLKRERAQRGICSLVSNTPNKFTGIANKR*QKKK 418
           +KR+     DE     L R R +  + +L+SN  +K++  + K  + KK
Sbjct: 229 KKRRKAGASDEEALSALIRSRQKSRMYNLISNLESKYSKSSTKPKKSKK 277


>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +2

Query: 245 FIVLIIYKYRKRKNDDLEDEFNTIPLKRERAQRGIC--SLVSNTPNKFTGIANKR*QKKK 418
           F+  ++    K+KN    D       K +     +   ++V N  +   GI N+R  +K+
Sbjct: 13  FVAKLLIHESKKKNKSFVDHGYIEKEKTKLRPNKVFLNNMVRNVQSHNRGINNRRRDQKR 72

Query: 419 PSLHSIKQSRFL 454
             L SIKQ   L
Sbjct: 73  KQLISIKQDNDL 84


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 112 SRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 240
           SRR       H++ +K  A P ++H+S HR   +A+     +K
Sbjct: 587 SRRASKHESKHKRDSKHEARPESKHES-HRESKSAEKDKKDKK 628


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,377
Number of Sequences: 5004
Number of extensions: 43413
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)