Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333D04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0084 - 25690346-25691206 33 0.11
01_03_0060 - 12112595-12113974,12115970-12116077 30 1.3
06_02_0185 + 12774608-12775970,12776058-12776983 29 2.3
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 29 3.0
01_05_0337 + 21115388-21115961,21116471-21116597,21116683-211168... 29 3.0
03_06_0762 + 36078414-36078539,36078700-36078750,36078832-360789... 28 4.0
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 5.2
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 28 5.2
01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489... 28 5.2
12_01_0177 - 1312229-1312498,1314758-1315630,1315729-1315885,131... 27 6.9
05_02_0125 - 6852470-6852481,6852641-6853086,6853178-6853781,685... 27 6.9
02_05_1197 - 34908382-34908582,34908664-34908837,34909239-349093... 27 6.9
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 27 6.9
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010... 27 9.1
02_04_0551 + 23801464-23801802 27 9.1
>02_05_0084 - 25690346-25691206
Length = 286
Score = 33.5 bits (73), Expect = 0.11
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -3
Query: 240 FPMNRAAISSDGMTMSTIML-GSWWGGSFVS-LPMPSREESFPTALTTVS-VFPRHVSLK 70
+P AA+ GM ST G GG ++ LP SR +S TA + P H+S +
Sbjct: 197 YPPPPAAVGGVGMFHSTTTTTGGMLGGMALAVLPWVSRGQSPATAAASAYYTSPYHMSPR 256
Query: 69 LRRSYFEPER 40
LRR + E ER
Sbjct: 257 LRRQHMEVER 266
>01_03_0060 - 12112595-12113974,12115970-12116077
Length = 495
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 157 KTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQH 312
+ A R D++H P GP HR + HHL E KR + R H
Sbjct: 74 RVPASVRDSVDNKHYEPRLVSIGPYHRSK----HHLRAMEDRKRLYLLRFLH 121
>06_02_0185 + 12774608-12775970,12776058-12776983
Length = 762
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +2
Query: 218 IAALFIGNAFIVLIIYKYRKRKNDDLEDEFNTIPLKRERAQRGICSLVSNTPNKF 382
+AAL G L I K R+R DD E +T K ++ + SL + TP +F
Sbjct: 324 VAALATGAVVAFLYIKKRRRRVGDDPESLSSTAAFKFNKSSINLRSL-AGTPKEF 377
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -3
Query: 201 TMSTIMLGSWWGGSFV-----SLPMPSREESFPTALTTVSVFPRH 82
T S L SW+ G+ + +LP PSR+ S P L VF H
Sbjct: 431 TASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSH 475
>01_05_0337 +
21115388-21115961,21116471-21116597,21116683-21116884,
21117460-21117546,21117622-21117681,21117800-21117886,
21118451-21118522,21118675-21118730,21118812-21118897,
21119427-21119517,21119593-21119750,21119827-21119918,
21120110-21120190,21120282-21120479
Length = 656
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 468 GI*GQRKRLCFILCSEGFFFCYRL 397
GI + L F LCSE F C+RL
Sbjct: 609 GIMKENPELVFFLCSEDVFLCFRL 632
>03_06_0762 +
36078414-36078539,36078700-36078750,36078832-36078981,
36079055-36079803,36079914-36080013,36080116-36080259,
36080333-36080452,36080532-36080846
Length = 584
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 163 AAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKR 288
AAPP + HD H HP V +R+ + + E +K+
Sbjct: 25 AAPPPSSHDDAHPHPHPQSRRTVPARRLRQRLEQEVSELKKQ 66
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 435 ILCSEGFFFCYRLFAIPVNLFGVLETKLHIP 343
+L SEGF + + +F +L GVL+TKL +P
Sbjct: 116 LLASEGFGWGFGVFTFS-SLAGVLDTKLPVP 145
>05_01_0054 +
379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 27.9 bits (59), Expect = 5.2
Identities = 21/59 (35%), Positives = 35/59 (59%)
Frame = -3
Query: 351 HIPRCARSRFNGMVLNSSSKSSFFRFLYL*MMSTMNAFPMNRAAISSDGMTMSTIMLGS 175
H+P CA SRF G L +S+ SS F L + M++ N+ ++++ S+G T S+ + S
Sbjct: 765 HVP-CAASRFLGNELQASAISSNFG-LSVDFMNSNNSSVVHQSL--SNGFTSSSSFISS 819
>01_05_0611 -
23644692-23646439,23647011-23647551,23648851-23648952,
23649244-23649441
Length = 862
Score = 27.9 bits (59), Expect = 5.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 438 NKVAFSVPICLCMLKSLKLHN 500
N++ ++P CLC L+SL++ N
Sbjct: 493 NQIGGTIPACLCQLRSLRVIN 513
>12_01_0177 -
1312229-1312498,1314758-1315630,1315729-1315885,
1316207-1316247
Length = 446
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 93 FPRHVSLKLRRSYFEPERYNVLTLNPRAEF 4
FP H+ K SY E R + +TLNP +F
Sbjct: 197 FPCHIFDKHNGSYLEALRLDSVTLNPPLDF 226
>05_02_0125 -
6852470-6852481,6852641-6853086,6853178-6853781,
6853970-6854187,6854283-6854437,6854561-6854772
Length = 548
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 185 CWVLGGAAVLFLCRCPPV 132
CW+L G A+ C C PV
Sbjct: 498 CWILTGDAISAFCTCHPV 515
>02_05_1197 -
34908382-34908582,34908664-34908837,34909239-34909337,
34909444-34909644,34910229-34910336,34910498-34910882,
34911132-34911584,34911868-34912094,34912211-34912270
Length = 635
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +2
Query: 419 PSLHSIKQSRFLCPY---MPMYA*IFKTTQRNFDAVF 520
PS HS+ ++F Y MP+Y I+ TT ++ D ++
Sbjct: 246 PSFHSLHHTQFRTNYSLFMPVYDYIYGTTDKSSDELY 282
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -3
Query: 192 TIMLGSWWGGSFVSLPMPSREESFPTALTTVSVFPRHVSLKLRRSYFEPERYN 34
T++LG WW G P+ +SF T + + ++ SY PE N
Sbjct: 161 TVLLGEWWNGD----PVALESQSFSTGIPAPNADAYTINGMPGDSYLCPETTN 209
>06_03_0901 -
25800317-25800403,25800420-25800674,25800817-25801043,
25801773-25801929,25802977-25803159
Length = 302
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/32 (34%), Positives = 12/32 (37%)
Frame = +1
Query: 169 PPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL 264
PP H HP HR+R HHL
Sbjct: 20 PPSPPSPHSHHHPAKRSCRSPHRRREAHLHHL 51
>02_04_0551 + 23801464-23801802
Length = 112
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +1
Query: 64 SEFERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKR 243
S RH + RR+R GG R + + D P DSG +R R
Sbjct: 33 SRSRRHWRRRREPRPWRRRQRGAAGGGRTWTTCGEVEQRRWDGNGEFPALVDSGCAYRAR 92
Query: 244 VHRTHH 261
+ T++
Sbjct: 93 IRPTNN 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,045,810
Number of Sequences: 37544
Number of extensions: 292438
Number of successful extensions: 1003
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -