Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333D04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.094
Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical p... 33 0.094
U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.094
U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin iso... 33 0.094
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 30 0.87
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 29 2.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z83221-2|CAB05708.1| 444|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z81594-1|CAB04745.1| 908|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr... 27 8.1
U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical p... 27 8.1
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 27 8.1
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 27 8.1
AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH... 27 8.1
>Z48245-2|CAA88291.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 73 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 207
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>Z37139-10|CAA85495.1| 309|Caenorhabditis elegans Hypothetical
protein T27D1.1 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 73 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 207
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U95074-2|AAB94648.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 73 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 207
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>U36581-1|AAC47131.1| 309|Caenorhabditis elegans cyclophilin
isoform 9 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.094
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +1
Query: 73 ERHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSRHRHP 207
E ++ + R G + RRER T H +RN AP + HDS H+HP
Sbjct: 264 ENGITVRGRGGVRFRRERSATPEHWRRN---APTKWVHDS-HKHP 304
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 30.3 bits (65), Expect = 0.87
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +2
Query: 188 IVDIVIPSLLI-AALFIGNAFIVLIIYKYR--KRKNDDLEDEFNTIPLKRER 334
I+ +VIP +LI AL IG IV I Y+ R KRK + E+E + +RER
Sbjct: 831 ILFVVIPVVLILVALVIGG--IVFIWYRKREEKRKEKEAEEENEKLIAERER 880
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 136 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHH 315
G H R PPR + R+RH G H+ + HH Q+ +R+ R +H
Sbjct: 67 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHH--NQDRNRRQNHDRNRHQ 122
Query: 316 S 318
S
Sbjct: 123 S 123
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 136 GGHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVHRTHHL*IQETEKRRFGRRIQHH 315
G H R PPR + R+RH G H+ + HH Q+ +R+ R +H
Sbjct: 911 GQHHNRGHHHGPPRNHNQDRNRH--RNHDGNRHQNQDRSRHH--NQDRNRRQNHDRNRHQ 966
Query: 316 S 318
S
Sbjct: 967 S 967
>Z83221-2|CAB05708.1| 444|Caenorhabditis elegans Hypothetical
protein C49A1.3 protein.
Length = 444
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 129 ESFPTALTTVSVFPRHVSLKLRRSYFEPERYNVLTLNPRAEFG 1
E P A+ S P +LK+ + Y E E NPR EFG
Sbjct: 172 EKVPCAVYAESFVPIIWALKILQKYEEAEERTFKADNPREEFG 214
>Z81594-1|CAB04745.1| 908|Caenorhabditis elegans Hypothetical
protein T20F10.1 protein.
Length = 908
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +3
Query: 264 INTGNGKTTIWKTNSTPFH*NGNVHSAGYAV*SPT 368
I GN TTI T ST + +H AGY PT
Sbjct: 163 IRNGNPSTTISSTPSTTTEESIRIHPAGYRYDMPT 197
>Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical
protein F56F3.1 protein.
Length = 761
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +1
Query: 142 HRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRKRVH 249
H Q+ QH HR P + GP H++ +H
Sbjct: 411 HLQKFAKQQAESGQHIHHHRQPTPPNGGPQHQQHLH 446
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 139 GHRQRNKTAAPPRTQHDSRHRHPVAADSGPVHRK 240
GHR R+ + + R++ +SR R A+ S HR+
Sbjct: 2 GHRSRSNSRSQSRSRENSRGRSRSASKSPVYHRR 35
>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
protein R02F2.2 protein.
Length = 1182
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 188 SCWVLGGAAVLFLCRC-PPVKSRSRRL 111
SC +G AAV +C PP+K R R++
Sbjct: 820 SCSAIGNAAVTAMCTVPPPMKLRKRKI 846
>U00036-12|AAK29854.2| 237|Caenorhabditis elegans Hypothetical
protein R151.6 protein.
Length = 237
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +2
Query: 197 IVIPSLLIAALFIGNAFIVLIIYKYRKR 280
+++ + + LF+G AF ++++Y + +R
Sbjct: 106 MILSGIFVQILFLGQAFTIMLVYIWSRR 133
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +2
Query: 191 VDIVIPSLLI-AALFIGNAFIVLIIYKYR--KRKNDDLEDE 304
+ +VIP +LI AL IG IV I Y+ R KRK ++ E+E
Sbjct: 866 LSVVIPVVLILVALVIGG--IVFIWYRKREEKRKEEEAEEE 904
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 76 RHVSWKNRDGCQSRRERLFTGGHRQRNKTAAPPRTQHDSR 195
R W+N +S R +R R+++ +PPR + SR
Sbjct: 553 RRSRWENTSPIRSPRRSPLRRDNRDRSRSRSPPRRRRRSR 592
>AF143152-1|AAD37863.1| 237|Caenorhabditis elegans putative NADH
oxidoreductase complexI subunit protein.
Length = 237
Score = 27.1 bits (57), Expect = 8.1
Identities = 7/28 (25%), Positives = 19/28 (67%)
Frame = +2
Query: 197 IVIPSLLIAALFIGNAFIVLIIYKYRKR 280
+++ + + LF+G AF ++++Y + +R
Sbjct: 106 MILSGIFVQILFLGQAFTIMLVYIWSRR 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,068,618
Number of Sequences: 27780
Number of extensions: 251071
Number of successful extensions: 726
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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