Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   3.0  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    26   3.9  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   9.0  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   9.0  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   9.0  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   9.0  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    25   9.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   9.0  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 224  LKQQVELKTMTQHEPWPKGSVEGSS 298
            LKQ++EL +   + P+P  +VE  S
Sbjct: 952  LKQEIELSSRRGNRPYPSSAVESPS 976


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 55  AMVSGQMWNQIRGPPFFHRTKTGPVYIN 138
           +++  + WNQ RG   +H   TGP + N
Sbjct: 138 SLIINKGWNQQRGGIAWHTRTTGPPWTN 165


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 297 LEPSTLPFGQGSCWVMVFNSTCCFN 223
           L+ S   FG+G+ W +     CC+N
Sbjct: 112 LDKSQQWFGKGNAWRVSHGVYCCYN 136


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 189 QYSNNVTLQYKLSV*SPVYIDRAS 118
           Q++  +++Q+K     P+Y DRAS
Sbjct: 114 QFAGELSVQFKFIPTDPLYFDRAS 137


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 297 LEPSTLPFGQGSCWVMVFNSTCCFNH*DHTHNHSPIQYSNNVTL 166
           L  ST  +G  + +    N     NH D ++   PIQ SN  TL
Sbjct: 274 LPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQLSNYFTL 317


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  SSALQWCLGRCGIKLEAHHFSIEQKLA 124
           S+A  W LG+C   L+ H  S+   LA
Sbjct: 119 STARVWALGQCKYVLKGHQSSVWAVLA 145


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 172 YIVAILNGAVVVGMIL--MIEAAGGVKNHDPTRTLAE 276
           YI+A +    + G  +  +I AAGG+ +H P     E
Sbjct: 182 YILAFIKLLFITGFYIFAIIYAAGGIPHHKPPNLFKE 218


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -1

Query: 482 LPFIKFTCEIYFKNINRGRR-WSLA**FS-HLNKKLYGYPCVFALNTDKSSEKNTQTNIR 309
           LP++KF C+   KN     R + L+   S  LN      P  F L+   +  KN    + 
Sbjct: 30  LPYLKFDCDHNDKNYRASNRPFGLSTGLSVQLNASNMTDPFKFLLDNWHTIFKNGAIKLL 89

Query: 308 PTTDWNL 288
           P   W +
Sbjct: 90  PPEGWQI 96


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 509 LNDSDQKRVLPFIKFTCEIYFKNINR 432
           LN S +KR    +K   E+Y KN+N+
Sbjct: 583 LNRSSKKRAENSLKSKKELYLKNLNQ 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,512
Number of Sequences: 5004
Number of extensions: 49408
Number of successful extensions: 129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)