Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333C12f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 159 1e-39
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 159 1e-39
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 5e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 5e-06
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 29 2.0
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 27 6.2
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 159 bits (386), Expect = 1e-39
Identities = 68/116 (58%), Positives = 93/116 (80%)
Frame = -3
Query: 435 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 256
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
Query: 255 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 88
+V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 193 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 248
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 159 bits (386), Expect = 1e-39
Identities = 68/116 (58%), Positives = 93/116 (80%)
Frame = -3
Query: 435 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 256
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
Query: 255 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 88
+V RKT +AL +V D+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS+
Sbjct: 173 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 228
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 5e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -3
Query: 423 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 250
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 249 VHRKTCTCLALTNVESGDRASFSKVVEAIK 160
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 5e-06
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = -3
Query: 426 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 247
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 246 HRKTCTCLALTNVESGDRASFSKVVEAIK 160
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 229
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 229
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 229
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 229
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 80 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 229
MRAL L+PR PPP+ R+ + KF T K+ T +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 161 LMASTTFEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLTMQYGTPI 301
L+ T E +S D F V V TS+P +D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,828,891
Number of Sequences: 27780
Number of extensions: 163789
Number of successful extensions: 513
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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