Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    29   0.32 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   0.97 
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    27   2.2  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   2.2  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   3.9  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   5.2  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   9.0  

>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = -2

Query: 220 TVTRFM*LCISFYCICRYCENKTNFVLTDDFNVRIVNVCLLSVFGWLV--LKKKIVNTAL 47
           T+T++M L   +  I  YC + +  +  D+FN +  NV   +++  LV  L++ +     
Sbjct: 43  TITKYMEL---YTAIHNYCADASKTITVDNFNDQTANVLGEALYNNLVLYLEEYLARLRK 99

Query: 46  HVVVDSNHETE 14
             +  +NHE +
Sbjct: 100 ECISQTNHEEQ 110


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -2

Query: 517  ARVQLASRCVAIFLQSELVFCCLAVHRVVEVHRCNVMMYVVSVHNTC 377
            +  ++  +C ++  +    FCCL++H +  V  C + ++V  +H  C
Sbjct: 1248 SNTRICEKCYSLVPRMSCTFCCLSIHGLCIV--CGLCLHV--MHEDC 1290


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 212 SNSSNGTVVEKKPISSVPETPKVGTE 289
           SNSS+GT   + PI +V  T K  TE
Sbjct: 160 SNSSSGTSTPRGPIRAVQVTAKQNTE 185


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 185 KGDAELHKTSNSSNGTVVEKKPISSVPETP 274
           K +  +H  S+SSN + + K P++   +TP
Sbjct: 312 KNEISVHHDSSSSNVSPIYKNPVAEQSDTP 341


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 209 TSNSSNG-TVVEKKPISSVPETPKVGTEI 292
           T  S  G T V   P +S+P +P VGTE+
Sbjct: 616 TKGSKLGNTFVAPSPAASLPASPPVGTEL 644


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 89  KYRQQTHIYDPHIEIIS*NKVCFIFAISTDA 181
           KY   T +Y PHI++    ++   F   TDA
Sbjct: 66  KYAMATGVYKPHIKVFDFAEMSLKFERHTDA 96


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 91  FG-WLVLKKKIVNTALHVVVDSNHE 20
           FG W V KK I N AL++   +N+E
Sbjct: 298 FGRWYVWKKDIKNNALYICRGTNNE 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,566
Number of Sequences: 5004
Number of extensions: 41563
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)