Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624...    36   0.020
07_01_1157 + 10954619-10954835,10956078-10957114                       31   0.56 
08_02_0230 - 14572854-14574632                                         29   3.0  
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892...    28   5.2  
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350...    27   6.9  
09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616     27   9.1  
07_03_1521 + 27419859-27420106,27422050-27423363,27423885-274243...    27   9.1  

>03_06_0269 -
           32761354-32761857,32762094-32762190,32762387-32762421,
           32763035-32763040
          Length = 213

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +2

Query: 89  KYRQQTHIYDPHIEIIS*NKVCFIFAISTDAIKGDAELHKTSNSSNGTVVEKKPISSVPE 268
           K  ++T ++ P   I+  N   F  +  T+ +            +  TVVEKKP++S+  
Sbjct: 61  KEAEETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSS 120

Query: 269 TPKVGTEISNSG 304
           TP V TE+++ G
Sbjct: 121 TPLV-TEVTDGG 131


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
 Frame = -3

Query: 468 NWSSVVLRYTGLSKF---IDVTL*CT*C---LYITPAITAANNK 355
           N+ ++ LR  GLS+F   I+++L C  C   LYI+P I + +NK
Sbjct: 63  NFGTIYLRRLGLSRFIAKINISLCCLSCHSFLYISPFIVSISNK 106


>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 279 TFGVSGTLLIGFFSTTVPFELLLVLCNSASPFIASVDIAKIK--QTLF*LMISMC 121
           TF +    LI F    VP     V   SA+P +A VD+  I    TL  L+ +MC
Sbjct: 282 TFELDAPSLICFRCAQVPSLYFSVSLKSAAPCLAQVDLGSISGTATLGPLLTTMC 336


>01_05_0265 +
           20188160-20188211,20188291-20189019,20189103-20189231,
           20189857-20189938,20190034-20190166,20190269-20190340,
           20190478-20190573,20190651-20190764,20190838-20191050,
           20191144-20191242,20191328-20191488,20191589-20191685,
           20191828-20191989,20192068-20192148,20192242-20192320,
           20192414-20192550,20192638-20192688,20192776-20192844,
           20193583-20193700,20194142-20194197
          Length = 909

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 407 HNVTSMNFDNPVYRKTTEDQFALEK 481
           H   SM  DNP   KTTED F  +K
Sbjct: 407 HVEDSMETDNPNANKTTEDDFLRDK 431


>03_06_0769 + 36134298-36134356,36134740-36134919,36134975-36135007,
            36135008-36135128,36135227-36135266,36135811-36135863,
            36135937-36135998,36136354-36136506,36136949-36137160,
            36137480-36138972,36140560-36141483,36141734-36142043,
            36143818-36143874,36144114-36144167,36144452-36144510
          Length = 1269

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 173  TDAIKGDAELHKTSNSSNGTVVEK 244
            TD  K D E+ + SNS +  VVEK
Sbjct: 1015 TDGKKADVEVSRISNSDDNVVVEK 1038


>09_06_0295 + 22099791-22100030,22100681-22100797,22100886-22102616
          Length = 695

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 395 HYVHHNVTSMNFDNPVYRKTTEDQFALEKN 484
           H +H++  S N +N  +RK T+++ +L  N
Sbjct: 134 HPIHNHSKSANLENDPFRKGTQERKSLSPN 163


>07_03_1521 +
           27419859-27420106,27422050-27423363,27423885-27424308,
           27424540-27424968,27425228-27425305,27426581-27426839,
           27428542-27428552
          Length = 920

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 130 FNVRIVNVCLLSVFGWLVLKKKIVNTALHV 41
           +N  I  VC+L V+  LVL+KKIV  A+ V
Sbjct: 109 WNGLIAIVCILDVWVLLVLQKKIVMAAVVV 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,748
Number of Sequences: 37544
Number of extensions: 244842
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)