Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333C11f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprot... 45 1e-04
L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprot... 45 1e-04
L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprot... 45 1e-04
D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprot... 45 1e-04
D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprot... 45 1e-04
D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprot... 45 1e-04
DQ067198-1|AAY46157.1| 873|Homo sapiens very low density lipopr... 45 1e-04
BC142653-1|AAI42654.1| 845|Homo sapiens very low density lipopr... 45 1e-04
AL450467-4|CAH72453.1| 752|Homo sapiens very low density lipopr... 45 1e-04
AL450467-3|CAH72455.1| 845|Homo sapiens very low density lipopr... 45 1e-04
AL450467-2|CAH72454.1| 873|Homo sapiens very low density lipopr... 45 1e-04
AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens ... 45 1e-04
Z75190-1|CAA99509.1| 699|Homo sapiens apolipoprotein E receptor... 42 0.002
D86407-2|BAA21825.1| 793|Homo sapiens ApoER2delta4-7 protein. 42 0.002
D86407-1|BAA21824.1| 963|Homo sapiens ApoER2 protein. 42 0.002
D50678-1|BAA09328.1| 963|Homo sapiens apolipoprotein E receptor... 42 0.002
BC051836-1|AAH51836.2| 904|Homo sapiens low density lipoprotein... 42 0.002
BC006443-1|AAH06443.1| 244|Homo sapiens Similar to low density ... 42 0.002
AL606760-4|CAI18908.1| 963|Homo sapiens low density lipoprotein... 42 0.002
AL606760-3|CAI18909.1| 700|Homo sapiens low density lipoprotein... 42 0.002
AL606760-2|CAI18910.1| 904|Homo sapiens low density lipoprotein... 42 0.002
AL355483-3|CAI22781.1| 963|Homo sapiens low density lipoprotein... 42 0.002
AL355483-2|CAI22782.1| 700|Homo sapiens low density lipoprotein... 42 0.002
AL355483-1|CAI22780.1| 904|Homo sapiens low density lipoprotein... 42 0.002
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 40 0.004
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 40 0.004
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 40 0.004
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 40 0.004
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 40 0.004
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 40 0.004
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 40 0.005
>S73849-1|AAB31735.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>L22431-1|AAA61344.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>L20470-1|AAA53684.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>D16532-1|BAA03969.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>D16494-1|BAA03946.1| 845|Homo sapiens very low density lipoprotein
receptor protein.
Length = 845
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 790 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 820
>D16493-1|BAA03945.1| 873|Homo sapiens very low density lipoprotein
receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>DQ067198-1|AAY46157.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>BC142653-1|AAI42654.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 790 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 820
>AL450467-4|CAH72453.1| 752|Homo sapiens very low density
lipoprotein receptor protein.
Length = 752
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 697 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 727
>AL450467-3|CAH72455.1| 845|Homo sapiens very low density
lipoprotein receptor protein.
Length = 845
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 790 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 820
>AL450467-2|CAH72454.1| 873|Homo sapiens very low density
lipoprotein receptor protein.
Length = 873
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 818 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 848
>AK092381-1|BAC03874.1| 752|Homo sapiens protein ( Homo sapiens
cDNA FLJ35062 fis, clone OCBBF2019195, highly similar to
VERY LOW-DENSITY LIPOPROTEIN RECEPTOR PRECURSOR. ).
Length = 752
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFALE 478
M+R++ H N+ SMNFDNPVY KTTE+ +++
Sbjct: 697 MWRNWQHKNMKSMNFDNPVYLKTTEEDLSID 727
>Z75190-1|CAA99509.1| 699|Homo sapiens apolipoprotein E receptor 2
906 protein.
Length = 699
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 642 IWRNWKRKNTKSMNFDNPVYRKTTEEE 668
>D86407-2|BAA21825.1| 793|Homo sapiens ApoER2delta4-7 protein.
Length = 793
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 677 IWRNWKRKNTKSMNFDNPVYRKTTEEE 703
>D86407-1|BAA21824.1| 963|Homo sapiens ApoER2 protein.
Length = 963
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>D50678-1|BAA09328.1| 963|Homo sapiens apolipoprotein E receptor 2
precursor protein.
Length = 963
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>BC051836-1|AAH51836.2| 904|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 904
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>BC006443-1|AAH06443.1| 244|Homo sapiens Similar to low density
lipoprotein receptor-related protein 8, apolipoprotein e
protein.
Length = 244
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 128 IWRNWKRKNTKSMNFDNPVYRKTTEEE 154
>AL606760-4|CAI18908.1| 963|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 963
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>AL606760-3|CAI18909.1| 700|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 700
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 643 IWRNWKRKNTKSMNFDNPVYRKTTEEE 669
>AL606760-2|CAI18910.1| 904|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 904
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>AL355483-3|CAI22781.1| 963|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 963
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>AL355483-2|CAI22782.1| 700|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 700
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 643 IWRNWKRKNTKSMNFDNPVYRKTTEEE 669
>AL355483-1|CAI22780.1| 904|Homo sapiens low density lipoprotein
receptor-related protein 8, apolipoprotein e receptor
protein.
Length = 904
Score = 41.5 bits (93), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQ 466
++R++ N SMNFDNPVYRKTTE++
Sbjct: 847 IWRNWKRKNTKSMNFDNPVYRKTTEEE 873
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 809 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 850
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 809 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 850
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 809 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 850
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 809 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 850
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 809 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 850
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 40.3 bits (90), Expect = 0.004
Identities = 17/42 (40%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYAPGSK 505
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+ S+
Sbjct: 786 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYSYPSR 827
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 39.9 bits (89), Expect = 0.005
Identities = 16/38 (42%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = +2
Query: 386 MYRHYVHHNVTSMNFDNPVYRKTTEDQFAL--EKNGYA 493
+++++ N+ S+NFDNPVY+KTTED+ + ++GY+
Sbjct: 821 LWKNWRLKNINSINFDNPVYQKTTEDEVHICHNQDGYS 858
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,456,105
Number of Sequences: 237096
Number of extensions: 1429963
Number of successful extensions: 3124
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 3020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3124
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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