Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    33   0.094
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    33   0.094
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    33   0.094
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   3.5  
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    27   6.2  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     27   6.2  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     27   6.2  

>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 15/65 (23%), Positives = 36/65 (55%)
 Frame = +2

Query: 80  QPSKYRQQTHIYDPHIEIIS*NKVCFIFAISTDAIKGDAELHKTSNSSNGTVVEKKPISS 259
           +P  + QQ    +P   ++  N   F+  +++DA + ++++H+ + S + TV+E+   + 
Sbjct: 112 RPPSFEQQQQNQNPDPPLLMGNNGTFVQEVASDAYQPNSDMHQLNFSFHRTVIEEVGRAV 171

Query: 260 VPETP 274
           +P  P
Sbjct: 172 MPTPP 176


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 11/16 (68%), Positives = 16/16 (100%)
 Frame = +2

Query: 416 TSMNFDNPVYRKTTED 463
           T++NFDNP+YR+TTE+
Sbjct: 851 TALNFDNPIYRRTTEE 866


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 11/16 (68%), Positives = 16/16 (100%)
 Frame = +2

Query: 416 TSMNFDNPVYRKTTED 463
           T++NFDNP+YR+TTE+
Sbjct: 853 TALNFDNPIYRRTTEE 868


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 42  TCSAVLTIFFFKTNHPNTDNKHTFTIRTLKSSVKTKFVLFSQ 167
           TCS + T+ FFK   P +  K     ++  S+ KT F + S+
Sbjct: 64  TCSVLATLSFFKQRQPASGGKTEDIFKSYCSNCKTFFGMSSK 105


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 27  FESTTTCSAVLTIFFFKTNHPNTDNKH---TFTIRTLKSSVKTKFVLFSQY 170
           F  T  C  + T+F F TN  + + KH   ++ +   K   +  F+L S Y
Sbjct: 87  FSCTNKCQTLKTLFRFNTNPMSAEEKHFPLSYGMLVYKDLPQVLFLLSSIY 137


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 27  FESTTTCSAVLTIFFFKTNHPNTDNKH---TFTIRTLKSSVKTKFVLFSQY 170
           F  T  C  + T+F F TN  + + KH   ++ +   K   +  F+L S Y
Sbjct: 87  FSCTNKCQTLKTLFRFNTNPMSAEEKHFPLSYGMLVYKDLPQVLFLLSSIY 137


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 27  FESTTTCSAVLTIFFFKTNHPNTDNKH---TFTIRTLKSSVKTKFVLFSQY 170
           F  T  C  + T+F F TN  + + KH   ++ +   K   +  F+L S Y
Sbjct: 3   FSCTNKCQTLKTLFRFNTNPMSAEEKHFPLSYGMLVYKDLPQVLFLLSSIY 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,281,810
Number of Sequences: 27780
Number of extensions: 250071
Number of successful extensions: 771
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)