Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 407  HNVTSMNFDNPVYRKTTEDQFALEKNGY 490
            HNV S  +D+P      EDQ+  +   Y
Sbjct: 1800 HNVFSPEYDDPANCAPEEDQYGSQYGQY 1827


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 370 SDRRCYVQTLRTS*RYIDELRQ 435
           SD+   +QTL+ + RYID L Q
Sbjct: 285 SDKLSKIQTLKLATRYIDFLFQ 306


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 430 EVHRCNVMMYVVSVHNTCDH 371
           ++H  ++ M ++   N CDH
Sbjct: 156 KLHGTDIEMRILKTKNECDH 175


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -2

Query: 430 EVHRCNVMMYVVSVHNTCDH 371
           ++H  ++ M ++   N CDH
Sbjct: 156 KLHGTDIEMRILKTKNECDH 175


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 508 QLASRCVAIFLQSELVFCCL 449
           Q+ + CVAI L + +   CL
Sbjct: 736 QITTLCVAISLSATVTLVCL 755


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 508 QLASRCVAIFLQSELVFCCL 449
           Q+ + CVAI L + +   CL
Sbjct: 826 QITTLCVAISLSATVTLVCL 845


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,267
Number of Sequences: 438
Number of extensions: 2960
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)