Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.3  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   3.9  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    26   3.9  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   5.2  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 121 YLFIGFQKFIYT-KIITLHIVPRISDITLISYYSFFLKC 234
           Y+F+ F K +   KI   H +PR +D+      S+F+ C
Sbjct: 12  YVFLPFSKRVENLKIDVAHKIPRAADLEDEDVESYFISC 50


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 109 LTPGYLFIGFQKFIYTKIITLHIVPRISDITLISYYSFFLKCYH 240
           +TP Y  + F  F     + LH+   I   TL  ++ F + CYH
Sbjct: 32  MTPFYSILCFLSFF---ALLLHLPCSIYSHTLHFFHHFTIACYH 72


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 264 MYRKYNNEAPKIFNCVSINK 323
           +Y+KY  + P +F  +SINK
Sbjct: 75  VYKKYGKQLPFLFKVLSINK 94


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -1

Query: 410 FQTIKTEYIAFLLYINNTID*KNYSN-IFFFVYRDAIKYFWCFIVVFPVHIGCVLSY 243
           F  I+    A LL ++N +     +N   FF+    + YFW F      H G V  Y
Sbjct: 207 FTYIENAAYAHLLAMDNLLSSNPTANGQVFFITNGQVIYFWDFARAIWAHAGHVPPY 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,303
Number of Sequences: 5004
Number of extensions: 32185
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)