Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1489 + 30492702-30493760                                         30   0.98 
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    27   9.1  
01_06_1557 - 38231826-38233391                                         27   9.1  

>06_03_1489 + 30492702-30493760
          Length = 352

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +3

Query: 63  SKQRGRTRTWNVTYVSNT---GLFIYRLSKIYLHKNYYTSHCSSDKRYHINI 209
           SKQ G  +  N    +     GL   ++S ++  K + TSHCSSD +   N+
Sbjct: 285 SKQNGAEKRLNQLVDAKDPGDGLAPMKISSVWRFKKFKTSHCSSDSKVLHNV 336


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 172 HIVPRISDITLISYYSFFLKCYHL*ERTHPICTGN 276
           H  PR+S ++   ++S FL  YHL      ICT N
Sbjct: 648 HSRPRMSHVSHTPFFSTFLSTYHL--SLIYICTNN 680


>01_06_1557 - 38231826-38233391
          Length = 521

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   LSISFYFH*RHHPCILSAISKQRGRTRTWNV 98
           L+++ Y   R   C+ SA+S++ GRTR W V
Sbjct: 59  LTLTCYSRARVAACV-SAVSRRLGRTRAWAV 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,841
Number of Sequences: 37544
Number of extensions: 163266
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)