Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C09f
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   2.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   6.6  

>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 314 YEMFDTVDKFLQSHTLXVKVPEEITKSAASEYVPWXL 424
           Y + D   +F+ S  L +K   E+    A+E++PW L
Sbjct: 461 YGLEDLDSQFIDS-LLHIKTSSELYLPLANEFIPWSL 496


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
 Frame = +2

Query: 176  TEDPAV----DVIGCXRRTKLRSLXHLSIVKTGTVEDDESADPXL 298
            T DPA      +I C       SL HL IV  G+   D   DP L
Sbjct: 1154 TNDPASLMIHQLISCMNAIHSNSLAHLVIVIDGSTLADIENDPEL 1198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,471
Number of Sequences: 5004
Number of extensions: 23715
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)