Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333C09f
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0489 - 19619623-19619748,19619850-19620165,19620487-196207...    29   2.1  
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329...    28   2.8  
09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116     27   4.9  
11_01_0080 - 619886-619979,620298-620815                               27   6.5  
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528...    27   8.6  
04_01_0129 + 1408408-1409055,1409107-1410013,1410145-1410294,141...    27   8.6  
01_01_0928 + 7339796-7339806,7339923-7340043,7340463-7340549,734...    27   8.6  

>12_02_0489 -
           19619623-19619748,19619850-19620165,19620487-19620747,
           19621320-19621710,19622242-19622254
          Length = 368

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 310 GLRNVRHSGQVSPKSYSXGES 372
           G+RNV H G  +P+SY+  ES
Sbjct: 145 GIRNVSHGGMSNPESYALTES 165


>02_01_0459 +
           3298780-3298788,3298900-3299037,3299174-3299207,
           3299528-3299531,3299814-3299949,3300034-3300090,
           3301689-3301786,3301876-3301947,3302056-3302228,
           3302552-3302698,3303113-3303336,3305300-3305306,
           3305634-3305800,3306033-3306068,3306787-3307004,
           3307115-3307172,3307761-3307842,3308045-3308207,
           3308594-3308598,3308700-3308885,3308969-3309548,
           3309642-3309774,3309880-3309948,3310184-3310395,
           3310654-3310891,3311228-3311386,3311501-3311926,
           3312010-3312447,3312593-3312712,3312784-3313266,
           3313471-3314009,3314178-3314667,3314836-3314904,
           3315735-3315839,3315940-3316158,3316254-3316508,
           3316602-3316651,3317175-3317284,3317372-3317454,
           3317560-3317772,3317870-3318040
          Length = 2391

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 302 KDPAYEMFDTVDKFLQSHTLXVKVPEEITKSAA 400
           KD  + M   + KF+++H   +K  EE+ +S A
Sbjct: 154 KDECHRMTSKMKKFIKAHARFLKAQEEVKRSQA 186


>09_04_0192 + 15478270-15480257,15480358-15480640,15480727-15481116
          Length = 886

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
 Frame = +2

Query: 239 HLSIVKTGTVEDDESADPXLAKDPAYEMFDTVDKFLQSHTLXVK--------VPEEITKS 394
           ++   +TG V   E ADP LA   A E+ D +   L S  + V+        +P+ ++K 
Sbjct: 703 YIEAKETGMVWRYEDADPRLAPLQAKELLDHLATVLASEPVAVRSGYKIVEVIPQGVSKG 762

Query: 395 AASEYV 412
            A+E +
Sbjct: 763 VAAECI 768


>11_01_0080 - 619886-619979,620298-620815
          Length = 203

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 423 RXHGTYSEAALFVISSGTFTXRV*LWRNL 337
           R H T S     V+S G F  R+ +WR+L
Sbjct: 111 RHHPTTSNHCFEVLSYGVFCERIPIWRSL 139


>08_02_1627 -
           28348225-28348725,28349061-28349114,28352613-28352810,
           28352856-28353380
          Length = 425

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +2

Query: 107 SGIETXXEHL*RMPXPVFXGMRETEDPAVDVIGCXRRTKLRSLXHLSIVKTGTVEDDESA 286
           +G      HL R+  P   G+R       D+I C  R K R+L H  ++   TV+   S 
Sbjct: 46  AGRHVVQRHLDRINKP---GVRSIHSADGDIIDCVPRHKQRALDH-PLLANHTVQTQPSQ 101

Query: 287 DPXLA 301
            P  A
Sbjct: 102 MPASA 106


>04_01_0129 +
           1408408-1409055,1409107-1410013,1410145-1410294,
           1419174-1419634,1419683-1419999,1420114-1420477
          Length = 948

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -2

Query: 380 PLELSP*EYDFGETCPLCRT----FRRPDPWPV*GR 285
           PLEL   EY+  E CP+C+      RR DP  V G+
Sbjct: 212 PLELE--EYENLEACPVCKALRYKIRRDDPGEVDGQ 245


>01_01_0928 +
           7339796-7339806,7339923-7340043,7340463-7340549,
           7341230-7341637,7341726-7341789,7342654-7342793,
           7342878-7343189,7343733-7344137
          Length = 515

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 263 TVEDDESADPXLAKDPAYEMFDTVDKFLQSH 355
           TVED ESA+    K   ++ FDTV  F   H
Sbjct: 172 TVED-ESANKSANKSQLFKQFDTVKNFSDHH 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,756,891
Number of Sequences: 37544
Number of extensions: 162821
Number of successful extensions: 374
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)